Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2057 ATGCTTCAAATTCACATTCTCTCGTACTCTCCTCCACTACACTCAAACTCAAAGGCTCTTTCTCCCTTTGTTGTCCCATCTTTATCTTCTTCTACAACTACTACTCCAACTCGGCGTCGTTTGAAGAACACTGCCGCTCCTGATAAAAAGAACCTGAAGCTCCTCACTTCCCGCATCGTCCAACTCACTCGCCGAAGACAGCTTCGCCAGATTTTTGAAGAGATTGAAATTGCCAAGAAACATTATGAGAAGCTGAACACTATTGTCATGAACGCGGTCATGGAGGCCTGTGTTCATTGCGGTGATATTGATTCAGCTCTGAGGATATTTGATGAGATGACAAAACCGGAGAGTTGTGGTGTGGATACTGTCACGTATGGCACGCTTTTGAAGGGATTAGGTGAGCTGCGGAAAGTTGATGAAGCCTTTCAATTGCTTGAAATTGTGGAAAAAGGTACTGCACCTGGAAATCCAAAGTTGTCAGGATCACTGATCTACGGTCTACTAAATGCCATAATTGAAGCAGGTGCGTCAGAAGGAGACTTACGTCGTGCAAATGGCCTACTTGCTCGTTATGGTTATGTCCTTCGTGAAGGTGGCCATTTTCCAGTCACAGTCTACAACTTACTCATAAAGGGGTATATCAACGCAGGTTTTCCTCAAGATGCAGTAAACTTGCACAATGAAATGTTACGTCAAGGAATGATGCCTGACAGGCTCACCTACAACACTCTCATGTTGGCATGTGTCAAGAGTCAAAAGATGGATGCTGCAATGCAATTTTTTGAAGACATGAAGGGTGAAGCACAGAAATATACCCACAATAATCTGTTGCCAGATATTGTCACGTATACAACACTGCTCAAGGGTTTTGGTCAGGCCAAAGATCTCTATTCAGTTCTGAAAATAGTGCTGGAAATGAAATCATGTCATGAGTTGTACATTGATCGAACAGCTTACACCGCAATAATTGATGCTTTATTAAACTGTGGCTCAGTTAAGGGTGCTCAATGCATTTTTGGAGAAATACTGAAGCATGCTGGTTGGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCTTTCGCCTTTAGAGGAGATTACAATGTAGTCAGAAACTTGCATAAGCGGCTGTTGCCAGATTCTGCAGGAACTATCTTGCCGATTGCCCAAAAGGAAGCTGATTTTCTTCTCATGGAAGCAGCGCTGAATGGTGGTCAGGTTGATGTTGCCATTGAAACTCTTATTAGTATTGCTTCAAAATGGAAGGGTATATCGTGGACAAGTCGTGGAGGCATGGTGACTTTGCGCATTGAGGCCATATTGGGATTTTCAAAATCCATACTCAGTCCTTTCCTACTTCCACAGGTTTCACCTGCTGAACCAGTTGAGAGATTCATGTTGCCATTTGAAGCAATAGGGCCACTACATGGTACTGTACAGTTGAAGAAAGTGGTTATGCGTTTTTTTAATGATGCTGTTGTTCCCATCGTAGATGATTGGGGCAGCTGTATAGGATTGTTGCACCGTGAAGACTGCACTCAGTTGAATGCTTCGGTGTCAACAATGATGAGAAGCCCACCTCCCATTGTTACAACCACAACATCAATTGGTCATGTAGTTGATTTGATTTTGGGGAAGGGGTACCGAATGCTTATCATTGTAAAGTATACCAGCTCGTATGGCACTGCATACAGCTCAAGGGCAGTTGGAGTTTTTACAACAGAGCAATTGTGTAGGTTTATCACACCCGCATCTGAATCACAAGGGCCCAAACTTTCAATCTATCGAAGATGA 1812 0.4349 MLQIHILSYSPPLHSNSKALSPFVVPSLSSSTTTTPTRRRLKNTAAPDKKNLKLLTSRIVQLTRRRQLRQIFEEIEIAKKHYEKLNTIVMNAVMEACVHCGDIDSALRIFDEMTKPESCGVDTVTYGTLLKGLGELRKVDEAFQLLEIVEKGTAPGNPKLSGSLIYGLLNAIIEAGASEGDLRRANGLLARYGYVLREGGHFPVTVYNLLIKGYINAGFPQDAVNLHNEMLRQGMMPDRLTYNTLMLACVKSQKMDAAMQFFEDMKGEAQKYTHNNLLPDIVTYTTLLKGFGQAKDLYSVLKIVLEMKSCHELYIDRTAYTAIIDALLNCGSVKGAQCIFGEILKHAGWNPELRPKPHLYLSMMRAFAFRGDYNVVRNLHKRLLPDSAGTILPIAQKEADFLLMEAALNGGQVDVAIETLISIASKWKGISWTSRGGMVTLRIEAILGFSKSILSPFLLPQVSPAEPVERFMLPFEAIGPLHGTVQLKKVVMRFFNDAVVPIVDDWGSCIGLLHREDCTQLNASVSTMMRSPPPIVTTTTSIGHVVDLILGKGYRMLIIVKYTSSYGTAYSSRAVGVFTTEQLCRFITPASESQGPKLSIYRR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2057 603 Gene3D Tetratricopeptide repeat domain 40 151 IPR011990 GO:0005515
Dere05g2057 603 Pfam PPR repeat 319 345 IPR002885 -
Dere05g2057 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 152 IPR002885 -
Dere05g2057 603 ProSiteProfiles CBS domain profile. 528 593 IPR000644 -
Dere05g2057 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Dere05g2057 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 268 IPR002885 -
Dere05g2057 603 Gene3D Tetratricopeptide repeat domain 273 442 IPR011990 GO:0005515
Dere05g2057 603 Pfam Pentatricopeptide repeat domain 273 309 IPR002885 -
Dere05g2057 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 116 IPR002885 -
Dere05g2057 603 Gene3D - 514 600 IPR046342 -
Dere05g2057 603 PANTHER OS09G0431600 PROTEIN 26 595 IPR044781 -
Dere05g2057 603 Pfam PPR repeat family 86 133 IPR002885 -
Dere05g2057 603 Pfam PPR repeat family 204 250 IPR002885 -
Dere05g2057 603 Pfam CBS domain 525 587 IPR000644 -
Dere05g2057 603 SUPERFAMILY CBS-domain pair 490 587 IPR046342 -
Dere05g2057 603 NCBIfam pentatricopeptide repeat 206 238 IPR002885 -
Dere05g2057 603 NCBIfam pentatricopeptide repeat 282 310 IPR002885 -
Dere05g2057 603 NCBIfam pentatricopeptide repeat 241 266 IPR002885 -
Dere05g2057 603 NCBIfam pentatricopeptide repeat 90 114 IPR002885 -
Dere05g2057 603 Gene3D Tetratricopeptide repeat domain 167 272 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2057 Dere-ChrDere05 30673698 30678765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2057 64 371 Glycosyltransferase AT1G05670 25.879 2.09e-18 87.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2057 05 30673698 30678765 Dere05g2057 05 30673698 30678765 ECH