Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2003 ATGGCGTCAGCTTGTAGGGTTTTATCATCAGTGAGGAAGAGGTTCAGTGGAAGGTTTAACTTTCTAGCACTTCCTTCGAGCTCTCACCACTTGAAGTTCCACAAAGAATCAAATTCGAATCCCTTGCTCATCAAATTGCTTCGGGTATCCAATTCACGCCTAAAACCCACGCTGGATCAGGAATTAGGTTCCCTGAAAAGCTCAGAATTTTCTTGGGAATCTCTGGTTACCTCTCTCAGGCATTCTTCTTCTGAGAAAGCTCGGTTGGTTTTGGAATGGATTTTGGAGAATATGCTGAAAAACAATGAAACAAATCACAGTGTCTTCTCCGAATTCATCCTTCTTTGTGGCAAGCTTCAGAATGTGCCACTAGCAATGGATGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCAACTCGCTGGTTTTTAATTCCCTTATAAACGCTTGCTTGTGTTCACATAATGTTATTACAGCATTTAGCTTATTTGAGATCATGGAGAGTTCAGAGACCTATAAACCTGATTTTCACACTTACAATATCTTTATTTCAGCATTTTCCATGTCAGGGAATGTTGATGCCATGTTAGCTTGGTACTCAGATAAAAAAGCGGCTGGATTCGGCCCTGATCTTCAAACATTTGAATCCCTTATATCAGGTTGTGTCAAATCAAGAAATTTTGAACTTGCTGATCAAATTTATGGAGAAATGATGACATCAGGAATTGTACCTAGTGTATCCATATTGGAAAATATGCTTAAAGGGCTTTGCAAGCAAAACAATTTGGAGCGAGCTGAGGAGTTCTTGAAGTTTGTGGTGGGTGTCGGATGGGAGATCAATGAACACATGGCTGATAAATTAATGGCATTGTATCTAGAATTAGGTCAAGTGGAAAAGATGGAGGAGCTACTTGAAACTATGAAGTCCCATCATATTACATATGAAGTTCTCTCCCGAATCCACTGTGGAATTATTCGGATGTATGCCAAACTGGATAGATTAGATGATGTAGAATTTGCTGTGGGAAGAATGTTAAAACAAGGGCTATCATTCACAAGTACAGATGTTGAAAAGGTTATCTGCTCATATTTTAGAAGAGAAGCTTATGATAGGCTAGACATATTCTTGGAATGTATAGAGACTTGCCATACGCTTAGCAGATCCACTTACGATCTGTTGATATCTGGCTATAAAAGAGCTGGATTACATGAAAAAGTAGATTCAATAATGGAGGCCATGAAATCAGCTGGATTTGCGTAG 1263 0.3935 MASACRVLSSVRKRFSGRFNFLALPSSSHHLKFHKESNSNPLLIKLLRVSNSRLKPTLDQELGSLKSSEFSWESLVTSLRHSSSEKARLVLEWILENMLKNNETNHSVFSEFILLCGKLQNVPLAMDAFASMEANGVKPNSLVFNSLINACLCSHNVITAFSLFEIMESSETYKPDFHTYNIFISAFSMSGNVDAMLAWYSDKKAAGFGPDLQTFESLISGCVKSRNFELADQIYGEMMTSGIVPSVSILENMLKGLCKQNNLERAEEFLKFVVGVGWEINEHMADKLMALYLELGQVEKMEELLETMKSHHITYEVLSRIHCGIIRMYAKLDRLDDVEFAVGRMLKQGLSFTSTDVEKVICSYFRREAYDRLDIFLECIETCHTLSRSTYDLLISGYKRAGLHEKVDSIMEAMKSAGFA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2003 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Dere05g2003 420 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Dere05g2003 420 NCBIfam pentatricopeptide repeat 390 419 IPR002885 -
Dere05g2003 420 NCBIfam pentatricopeptide repeat 214 247 IPR002885 -
Dere05g2003 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Dere05g2003 420 Pfam Pentacotripeptide-repeat region of PRORP 196 310 IPR033443 -
Dere05g2003 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 420 IPR002885 -
Dere05g2003 420 Gene3D Tetratricopeptide repeat domain 42 171 IPR011990 GO:0005515
Dere05g2003 420 Pfam PPR repeat 389 419 IPR002885 -
Dere05g2003 420 Gene3D Tetratricopeptide repeat domain 196 323 IPR011990 GO:0005515
Dere05g2003 420 Gene3D Tetratricopeptide repeat domain 324 420 IPR011990 GO:0005515
Dere05g2003 420 Pfam PPR repeat family 139 187 IPR002885 -
Dere05g2003 420 PANTHER EXPRESSED PROTEIN 32 419 IPR044179 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2003 93 353 Glycosyltransferase AT1G05670 24.335 8.67e-20 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2003 05 29952656 29954593 Dere05g2003 05 29952656 29954593 ECH