Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1996 ATGGCGACGCCCTCGTTGGACGAAGAAACAGCTCAGAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGATAGCAACCTTCCTAGGGACAGTTTTCTCAAAAAATCTATAAGTGAAAGCGAAGATGGCATGGTTAGTTTAGCTTTGATTTGTTCTTTTTCTCGGATGAGAAAACATCTTAATCTGGAGGATGTAAAGCCGGATCAAGTCCCTGAAGATACCGTCAAAGCTGTTGCTGAAACTCTGAGGAAATCGGATTCACTTAAGATCTCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTGGACATAAGAACAATTGCTGCATTACCATTTGAATATGATGTAAAGCGTGAAGATGTAGAGGCATTCTTTGGCCAATTTGCCAAGGTCAATAGTGTCAGGCTTCCCCGTCATGTTGGAGACAAAAGGTTTTTCTGTGGCACTGCCCTTGTTGAGTTTTCATCGGAACAAGATATTGGAGAAGTTTTGGGACAAAAGTTGGTCTATGCAGGGGCTGAGTTAGAATTGAAGCCAAAGAAGGATTTTGATGCAGAGAGAGAAAAGGAGTTAGAAGAGCATGAAAAATCTGGTGCACTTATGGGTTCAAATCGCCAGAATAACTCGAATGCAGAAGCGGACTACCCCAAGGGCTTAATTATATCCTTCAAGCTAAAAAGCAATTCAGATTATGTTCCTGTGGGACAAAATGGTGCTCATCAAGAAGCCAATGATAATGGTAGTGTCTCTAATGCAGATGAACAAAATACCTCAGAAAGTGTTGCTGAGGTTAATGAACAAAAGGCATCAGATAATACTGACAATGATAAAGAAAACCACGGGGCCAGTGAAGGAAAGGAAGCTGAAGGTGAAGAAAAGATTCAAGAAACTGATGAAAAATGTTCAGCTGCTGCTTACAAGGACAACATGGATGTTGTCTTGCGTGAGGATTTAAAAGGTGTCTTTGAGAAGTTTGGTTCTGTGAAGTACATTGATTTCAAGATTGGAGCAGATTCAGGATACATCCGGTTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTGCTGAGAAGGGGGGTTTGGCTGTGAAGAATTTTATTGCTATTTTAGATCCAGTGTCTGGTGAGGCCGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAGGAAAAGCGTCGAGACAAGAAGGGTACCCGAGGAAGGGGAGGGAGGCATGGTAGAGGGGGAAAACATGCCCGGTCTAGAGAGAATGACTCTCCGGTGAATCGCCCAAATAAAGCTCAGAAAGTCGGAACGGCGTAA 1347 0.4343 MATPSLDEETAQKVIRQVEFYFSDSNLPRDSFLKKSISESEDGMVSLALICSFSRMRKHLNLEDVKPDQVPEDTVKAVAETLRKSDSLKISEDGKKVGRTTELLKPEEVIEQVDIRTIAALPFEYDVKREDVEAFFGQFAKVNSVRLPRHVGDKRFFCGTALVEFSSEQDIGEVLGQKLVYAGAELELKPKKDFDAEREKELEEHEKSGALMGSNRQNNSNAEADYPKGLIISFKLKSNSDYVPVGQNGAHQEANDNGSVSNADEQNTSESVAEVNEQKASDNTDNDKENHGASEGKEAEGEEKIQETDEKCSAAAYKDNMDVVLREDLKGVFEKFGSVKYIDFKIGADSGYIRFEEPEAAQKARAAAVLAEKGGLAVKNFIAILDPVSGEAEREYWSLLRGNQEKRRDKKGTRGRGGRHGRGGKHARSRENDSPVNRPNKAQKVGTA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1996 448 Gene3D - 295 416 IPR012677 -
Dere05g1996 448 CDD LA_like_plant 10 99 - -
Dere05g1996 448 MobiDBLite consensus disorder prediction 195 224 - -
Dere05g1996 448 Pfam RNA binding motif 324 416 IPR014886 GO:0003723
Dere05g1996 448 Gene3D - 109 207 IPR012677 -
Dere05g1996 448 Pfam La domain 14 84 IPR006630 -
Dere05g1996 448 SUPERFAMILY "Winged helix" DNA-binding domain 6 102 IPR036390 -
Dere05g1996 448 MobiDBLite consensus disorder prediction 195 210 - -
Dere05g1996 448 SUPERFAMILY RNA-binding domain, RBD 108 189 IPR035979 GO:0003676
Dere05g1996 448 PANTHER LUPUS LA PROTEIN-RELATED 9 293 IPR045180 -
Dere05g1996 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 174 IPR000504 GO:0003723
Dere05g1996 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Dere05g1996 448 CDD RRM1_La 117 189 - -
Dere05g1996 448 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Dere05g1996 448 SMART rrm1_1 315 379 IPR000504 GO:0003723
Dere05g1996 448 SMART rrm1_1 117 189 IPR000504 GO:0003723
Dere05g1996 448 Gene3D - 6 106 IPR036388 -
Dere05g1996 448 MobiDBLite consensus disorder prediction 280 308 - -
Dere05g1996 448 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dere05g1996 448 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dere05g1996 448 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Dere05g1996 448 FunFam La protein 2 6 106 - -
Dere05g1996 448 ProSiteProfiles xRRM domain profile. 308 428 IPR014886 GO:0003723
Dere05g1996 448 MobiDBLite consensus disorder prediction 243 308 - -
Dere05g1996 448 SMART la 8 100 IPR006630 -
Dere05g1996 448 MobiDBLite consensus disorder prediction 399 448 - -
Dere05g1996 448 MobiDBLite consensus disorder prediction 243 279 - -
Dere05g1996 448 SUPERFAMILY RNA-binding domain, RBD 326 411 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1996 Dere-ChrDere05 29892091 29895585 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1996 05 29892091 29895585 Dere05g1996 05 29892091 29895585 ECH