LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1777	ATGAATTCTTCTAGGTCAAGTTTTTTGCCTTTAGGAGATCGAATCTGTGCGGCATTTGTATCATGTGTAGCTATAATCGAGGCTCTGATGTTCGCTATGACCGAGTGTTGCAACTATCGGCCACGCGTCCAGAAATGTCGCTACGGTGCCAAAGATCTGGCGCGACTGGCTGGTGAAACTAGATTTACTGTTAACGAAGTGGAGGCATTGTATGAGCTATTTAAGATGTTAAGTAGCTCGATAATTGATGATGGTTTGATTCACAAGGAGGAGCTTCGTTTGGCAATAATTCAAACCCCACATGGAGAAAATATTTTCCTAGATCGAGTTTTTGATCTTTTTGATGAAAAGAGAAATGGTGTTATCGAGTTTGAGGAATTTGTCCATGCACTCAGTGTTTTCCATCCTCATACTCCTGTAGAAGAAAAAATTGATTTTGCATTTAGGCTGTACGATCTGAGGCAAACCGGGTATATTGAGTGGGAAGAAGTCAAGCAAATGGTTAAAGCCATATTGATGGAATCTGACACAAATCTGTCAGATGATCTTCTTGAAGCTATTGTTGACAAGACCTTTACTGATGCTGATAAGGACAACGATGGTAGAATTAGTAAAGAGGAATGGAAAGATTATGTGAGTCGAAATCCATCCCTCTTGAAGAACATGACACTTCCATATCTAAAGGACATCACCACTCTGTTTCCGAGCTTTATTTTTGACACGGAGGTTGAAGCTTGA	738	0.4038	MNSSRSSFLPLGDRICAAFVSCVAIIEALMFAMTECCNYRPRVQKCRYGAKDLARLAGETRFTVNEVEALYELFKMLSSSIIDDGLIHKEELRLAIIQTPHGENIFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPHTPVEEKIDFAFRLYDLRQTGYIEWEEVKQMVKAILMESDTNLSDDLLEAIVDKTFTDADKDNDGRISKEEWKDYVSRNPSLLKNMTLPYLKDITTLFPSFIFDTEVEA	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1777	245	CDD	EFh	143	213	IPR002048	GO:0005509
	Dere05g1777	245	PANTHER	CALCINEURIN B	34	244	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Dere05g1777	245	CDD	EFh	107	169	IPR002048	GO:0005509
	Dere05g1777	245	ProSitePatterns	EF-hand calcium-binding domain.	196	208	IPR018247	-
	Dere05g1777	245	ProSiteProfiles	EF-hand calcium-binding domain profile.	139	174	IPR002048	GO:0005509
	Dere05g1777	245	FunFam	calcineurin B-like protein 3	52	245	-	-
	Dere05g1777	245	Pfam	EF hand	107	132	IPR002048	GO:0005509
	Dere05g1777	245	PRINTS	Recoverin family signature	203	223	-	-
	Dere05g1777	245	PRINTS	Recoverin family signature	110	131	-	-
	Dere05g1777	245	PRINTS	Recoverin family signature	157	175	-	-
	Dere05g1777	245	ProSiteProfiles	EF-hand calcium-binding domain profile.	102	137	IPR002048	GO:0005509
	Dere05g1777	245	SMART	efh_1	187	215	IPR002048	GO:0005509
	Dere05g1777	245	SMART	efh_1	143	171	IPR002048	GO:0005509
	Dere05g1777	245	SMART	efh_1	106	134	IPR002048	GO:0005509
	Dere05g1777	245	SUPERFAMILY	EF-hand	53	237	IPR011992	-
	Dere05g1777	245	Gene3D	-	52	245	-	-
	Dere05g1777	245	Pfam	EF-hand domain pair	141	208	IPR002048	GO:0005509
	Dere05g1777	245	ProSiteProfiles	EF-hand calcium-binding domain profile.	183	218	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1777	Dere-ChrDere05	27560690	27564667	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1777	14	244	EF-hand Containing Proteins	AT4G26570	55.319	9.65e-87	255

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g1777	05	27560690	27564667	Dere05g1777	05	27560690	27564667	ECH