Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1775 ATGACTTTGATTTCGAGTATAATAACCGAGTTGACTCGGAATCTCCATAGTTCGGCTATTTTCTTATTGATCACAGTCGCCACCATCAAAGTTTCTCATATTTTCTACCGATATTTTCACCGAAATTCTAGAATTTCCTTAATGTCTTCTGCAAATGGTAACGAGGCCCTTCGGCGAAGCCGTATCCTCTCAAGCAAGCTCTACTTCGATGTACCTCTGTCCAAGGTTCCGCTTATCTACTCGGAGTCGTACGATATAGCGTTTCTGGGCATAGAGAAACTGCACCCATTTGATTCATCTAAATGGGGACGCATTTGTCGATACCTCATTTCATTTGGAATGCTAGACAAAAATAGCATTGTTGAGCCTCTGGAAGCTTCCAAGGATGATCTTCTAGTGGTACATTCAGAATCATACTTGAACAGCCTGAAGAATAGTTCAAATGTTGCTAAGATAATTGAGGTCCCTCCTGTGGCATTATTTGCCAATTGTCTTCTGCAGCGTAAAGTTCTTTTCCCATTTCAGAAGCAGGTTGGAGGGACTATATTGGCAGCAAAACTTGCAAAGGAGAGAGGATGGGCAATTAATGTAGGCGGAGGTTTCCATCACTGTTCAGCAGAAAAAGGAGGTGGATTTTGTGCGTATGCAGATATTTCCCTATGCATCCACTTTGCTTTTGTTAGATTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATGGACTTTGCCAATGACAGCCAAGTCTATATCCTGGATATGTTCAATCCTGGAATATATCCTTTTGATTATGTGGCCAGGAAATACATAAATCAGATAGTTGAAGTGAAGAGTGGGACACGTACTGAAGATTACCTGCTGAAATTAGACGAAGCACTTGAGATTGCTGGGCATACGTTTGACCCTGAGTTGGTAATCTATAATGCTGGAACTGACATTCTGGACGGTGATCCATTGGGCAGGTTAAAGATCAGTCCTGAAGGAATTGCCCTTAGAGATGAAAAAGTTTTTCGATTTGCTCGAGAGAAGAAGGTTCCTATTGTCATGCTCACATCAGGTGGTTACATGAAGTCCAGTGCTAGAGTCATTGCAGATTCTATAGTCAATCTCTCGAAGAAATGTTTGATAGATTCGGGACATGGTTGA 1170 0.4137 MTLISSIITELTRNLHSSAIFLLITVATIKVSHIFYRYFHRNSRISLMSSANGNEALRRSRILSSKLYFDVPLSKVPLIYSESYDIAFLGIEKLHPFDSSKWGRICRYLISFGMLDKNSIVEPLEASKDDLLVVHSESYLNSLKNSSNVAKIIEVPPVALFANCLLQRKVLFPFQKQVGGTILAAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEMDFANDSQVYILDMFNPGIYPFDYVARKYINQIVEVKSGTRTEDYLLKLDEALEIAGHTFDPELVIYNAGTDILDGDPLGRLKISPEGIALRDEKVFRFAREKKVPIVMLTSGGYMKSSARVIADSIVNLSKKCLIDSGHG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1775 389 Gene3D Histone deacetylase domain 75 386 IPR037138 -
Dere05g1775 389 SUPERFAMILY Arginase/deacetylase 75 378 IPR023696 -
Dere05g1775 389 Pfam Histone deacetylase domain 95 376 IPR023801 -
Dere05g1775 389 PANTHER HISTONE DEACETYLASE 2-RELATED 85 378 - -
Dere05g1775 389 FunFam Histone deacetylase 11 76 385 - -
Dere05g1775 389 CDD HDAC_classIV 95 378 IPR044150 GO:0004407|GO:0016575
Dere05g1775 389 PRINTS Histone deacetylase superfamily signature 233 248 IPR000286 -
Dere05g1775 389 PRINTS Histone deacetylase superfamily signature 310 320 IPR000286 -
Dere05g1775 389 PRINTS Histone deacetylase superfamily signature 199 222 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1775 Dere-ChrDere05 27545225 27549699 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1775 05 27545225 27549699 Dere05g1775 05 27545225 27549699 ECH