Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1704 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCACCGGAGTCCCTTGCAACAAGGGATTTCTCTGCCAGTGGGCTCTCTTCGAGGACTGGGGATTGGGAATCCAAATTTGATGACACCCAAGTAGACGAAGTTGAGTCTACTCTTAAAGAAGCTCTCTCCTTGAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAAAGAGGGAATTTCGATGCTGCCCTTCAAGTATTTCAGGGGATCGACATTAGGGGTTTGACCCCAAGGATGATTAGGGCTATTGCTGAGAGAACCAGGCAAAAAAAGCCACGTTCTAAGGCCGATCGTGTGCTTCCCACTATAATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCTATTCTGCTTAAAGCTAAATCATTGGAGGGACTTGGGCGCTACATTGAGGCTGCAAAGGAATGCAAAGTAATTCTGGATACGGTTGATTCTGCTCTACCAAGTGGAATGCCTGAAGGTATTGCCGAAGATTGTAAATTGCAAGAGATGTTCCACAGAGCATTGGAGTTGCTTCCAAACCTTTGGACCAAGGCAGGCTTACTAGATGAAGCCATCACTGCTTATCGGCGGGCTCTGGTCAAGCCATGGAATTTGGAGCCGCAAAGGCTGGCTAGCATGCAAAAAGATTTAGCTACCACGCTGCTTTATGGTGGTGTTGAAATAAGCCTCCCCCCTCACTTGCAAGTATGGGGTCTAACAACACCCAAGGATAACATTGAAGAAGCTATACAGTTGTTATTAATACTCATGAGAAAGGTGACAATTCAGGAAATTGAATGGGATGCTGAACTATTGGATCATCTTACATTCGCACTTTCAGTGACTGGGATGTTTGAATCACTGGCAGATCACGTCGAGCAGATCCTTCCAGGTATCTATAGTCGTGCTGAGAGGTGGTATTTTCTTGCTCTTTGTTATTGTGCTGCAGGACAGAATGAAGCAGCATTGAACCTTCTGAGGAAGGCTTGCGGTAGTTCTGAAGCAAAGCATAGACCCCATTTTCTTTCCTTTTTATTAGGAGCAAAACTGTGTTCCCAAGATCCCAACCATGCCCCTGAAGGGATTAACTTATCACGTAAAGTGATTGATCTAGCCAAGCATCAATGTGAGCATTTTCAGGGTCAAGGTCACAAGTTTCTCGGTGTTTGCTATGGGGCTGCCGCTAGAAGTTCTGTGCTGGATTCTGAAAGAGTTATCTGTCAAAGAGAGTCTTTGAACTCTTTAAACCAAGCTGCTGTGATCGAAAATTGTGACCCAGAAGTTGTATTCAGCCTTGGATTGGAAAATGCAGTTCAAAGAAATCTGGATGCAGCTTATGAGAATGCAGTGATGTACTCAGATATGATTGTTGGCTGCTCAGGAAGAGGTTGGCAGCTATTAGCACTCATAGTATCTGCACGGCAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAATCCGGGAGGATGGATCAGTTACAACTTTTAAGATTGAAAGCCGTGCTTCAAATAGCTCAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTACTAGCACTAATTGAAGCAAGAAAGGATTTGTGGATTCAATATAAGAACTACGATCCAGCAAACACACTGAGACAAGAGGCATTAACAGGAAGGAACTTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTCGGTGCCTTGCTTGATGCAAAAACTTGTGTGGACAAAGCCCGGTTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACAGGGACATTTTTTGAAGCTCAATCATTATACAAGGAGGCCATTGTTTCTTTCTCAATCGCATTGTCGATAGAACCAGATTATGTTCCCAGTATCATTTCAACTGCAGAGTTGTTGTTGAAACTCGGTATGCAATCGCTTCCAATCGCAAGAAGCTTTTTAATGAACGCTTTGCGGTTAGAACCCACAAACCATGATGCGTGGTTCAACCTTGGATTGATCTCAAAAATGGAAGGCTCATTACAGCAAGCAGCAGATTTCTTCCAAGCTGCTTATGAGCTAAAGCTTTCAGCTCCAGTGGAAAGATTTGTGTGA 2148 0.4418 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWESKFDDTQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRGLTPRMIRAIAERTRQKKPRSKADRVLPTIMSMHSVSLLLEAILLKAKSLEGLGRYIEAAKECKVILDTVDSALPSGMPEGIAEDCKLQEMFHRALELLPNLWTKAGLLDEAITAYRRALVKPWNLEPQRLASMQKDLATTLLYGGVEISLPPHLQVWGLTTPKDNIEEAIQLLLILMRKVTIQEIEWDAELLDHLTFALSVTGMFESLADHVEQILPGIYSRAERWYFLALCYCAAGQNEAALNLLRKACGSSEAKHRPHFLSFLLGAKLCSQDPNHAPEGINLSRKVIDLAKHQCEHFQGQGHKFLGVCYGAAARSSVLDSERVICQRESLNSLNQAAVIENCDPEVVFSLGLENAVQRNLDAAYENAVMYSDMIVGCSGRGWQLLALIVSARQRFKDAETIVDFALDESGRMDQLQLLRLKAVLQIAQQQPKQAIETYRILLALIEARKDLWIQYKNYDPANTLRQEALTGRNLEMEAWQDLATIYADLGALLDAKTCVDKARLIEFFSPRSWHITGTFFEAQSLYKEAIVSFSIALSIEPDYVPSIISTAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLQQAADFFQAAYELKLSAPVERFV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1704 715 Gene3D Tetratricopeptide repeat domain 546 710 IPR011990 GO:0005515
Dere05g1704 715 MobiDBLite consensus disorder prediction 21 37 - -
Dere05g1704 715 SUPERFAMILY TPR-like 65 461 IPR011990 GO:0005515
Dere05g1704 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Dere05g1704 715 SMART tpr_5 186 219 IPR019734 GO:0005515
Dere05g1704 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Dere05g1704 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Dere05g1704 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Dere05g1704 715 SMART tpr_5 572 605 IPR019734 GO:0005515
Dere05g1704 715 SUPERFAMILY TPR-like 307 543 IPR011990 GO:0005515
Dere05g1704 715 Coils Coil 56 76 - -
Dere05g1704 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Dere05g1704 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Dere05g1704 715 MobiDBLite consensus disorder prediction 6 39 - -
Dere05g1704 715 Gene3D Tetratricopeptide repeat domain 253 545 IPR011990 GO:0005515
Dere05g1704 715 Gene3D Tetratricopeptide repeat domain 41 237 IPR011990 GO:0005515
Dere05g1704 715 SUPERFAMILY TPR-like 549 706 IPR011990 GO:0005515
Dere05g1704 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1704 Dere-ChrDere05 26752526 26755278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1704 1 715 Calmodulin-binding Proteins AT1G27460 60.501 0.0 879
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1704 05 26752526 26755278 Dere05g1704 05 26752526 26755278 ECH