Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1657 ATGGGCCACGCTGCTTCCACGGCCGCAATACCTCGCCGTCGACAAAATTATCATTCCCACCGACCCAAGTCCAAGTCCAGATCAACGCCTTCCGTTTCTCCCATGCTCCCCGATGAAAACCGCGAGTCCCTCCAAGAGGTCATCCATGCAGTCCCGGACTACATCTCTGATCTTCCCGACGAGTGCTTGGCTTGCATTTTCCAGTCACTTAGCTCCGCCGACCGCAACCGTTGCTCCCTCGTATGCCGGCGGTGGCTCCAGATCGAGGGACAGAGCCGTCACCGTCTCTCCCTCAACGCTCAATCAGATCTTCTCCCGGTTATCCCTTCTCTTTTCTCTCGATTCGATTTCGTCACGAAGCTCGCTTTGAAATCCGACCGTAGATCCGTTAGCATTGGGGACGAAGCGCTTGACCTCATCTCTCAACGATGCCCTAATCTTACTCGCCTGAAAGTCCGTGCCTGCCGTGAACTTACGGATACGGGCATGGAGGCCTTTGCAAAGAATTGCAAGGGTTTGAAGAAACTTTCCTGTGGATCTTGCACCTTCGGAGCCAAAGGAATGAACGCTGTGCTCAAACATTGCGCCTCTTTGGAAGAATTAACTGTAAAGCGTCTCCGGGGAATTACCGATAGAGCAACGACGGAGCCGATTGGAGCCGGTGTTGCAGCGTCATCTCTCAAAACAATTTGCTTAAAGGAGCTATATAATGGGCAGTGTTTCGGGCCACTTATTCTTGGTTCGAAGAATCTAAGGACCTTGAAGATCTTCAGGTGCGCTGGCGACTGGGATAAACTTTTTCAACTTCTAGCGGATCGAGTACCAAGTTTTGTCGAACTCCACCTTGAGAGGCTGCAGACTAGCGATATTGGCTTGGCGGCAATCTCTAATTGTTCGACTCTGGAAATTTTGCATCTTGTCAAGACCTCAGAGTGCACAGATTTAGGACTCATCGCAATTGCAGAACGATGTAAGCTGTTACGAAAACTTCATATTGACGGGTGGAAGACGAATCGTATAGGTGATGAAGGTCTAATAGCAGTTGCTAAATTTTGCACATATCTTCAGGAACTGGTCCTTATTGGTGTCAATCCCACTAACGCGAGTTTGGAAATGTTGGCATGCAATTGCCAGAATCTAGAGCGATTGGCGTTATGTGGAAGTGACACAGTTGGTGATGTTGAAATATCGTGCATTGCAGCGAAATGCATAGCGTTGAAGAAACTTTGTATTAAGAGTTGCCCTGTGTCTGATCATGGTATGGAAGCCCTCGCAGCTGGGTGCCCGAATTTGGTCAAAGTAAAGATTAAGAAGTGCAAGGGTGTAACAGCTGAGAGTGCAGATTGGCTGAGGTTAAGTAGGGGATCGCTTGCTGTAAATTTAGATGCTGGCGATACAGAAATTCAGGACGCAAGTGCTAGTGATGGTGGAGCCCAAGATAACGCCCAAGAATTACCTTCAATCCCCAGCCAGACAGCAGCTTCAGCTCCCATTGCATCAAGCAGTACTAGTCGATCAACTTCATTCAAGTCAAGGTTAGGACTTTTCTCTGGGAAGAGTTTAATGGCTTGCACTTTGAGAAGATTGTCTGGTGGTAACAGTAGTTCTCGGCATGGTTAG 1620 0.4858 MGHAASTAAIPRRRQNYHSHRPKSKSRSTPSVSPMLPDENRESLQEVIHAVPDYISDLPDECLACIFQSLSSADRNRCSLVCRRWLQIEGQSRHRLSLNAQSDLLPVIPSLFSRFDFVTKLALKSDRRSVSIGDEALDLISQRCPNLTRLKVRACRELTDTGMEAFAKNCKGLKKLSCGSCTFGAKGMNAVLKHCASLEELTVKRLRGITDRATTEPIGAGVAASSLKTICLKELYNGQCFGPLILGSKNLRTLKIFRCAGDWDKLFQLLADRVPSFVELHLERLQTSDIGLAAISNCSTLEILHLVKTSECTDLGLIAIAERCKLLRKLHIDGWKTNRIGDEGLIAVAKFCTYLQELVLIGVNPTNASLEMLACNCQNLERLALCGSDTVGDVEISCIAAKCIALKKLCIKSCPVSDHGMEALAAGCPNLVKVKIKKCKGVTAESADWLRLSRGSLAVNLDAGDTEIQDASASDGGAQDNAQELPSIPSQTAASAPIASSSTSRSTSFKSRLGLFSGKSLMACTLRRLSGGNSSSRHG 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1657 539 ProSiteProfiles F-box domain profile. 52 88 IPR001810 GO:0005515
Dere05g1657 539 FunFam F-box/LRR-repeat protein 4 55 93 - -
Dere05g1657 539 PANTHER UNCHARACTERIZED 56 470 - -
Dere05g1657 539 SUPERFAMILY RNI-like 102 454 - -
Dere05g1657 539 MobiDBLite consensus disorder prediction 1 39 - -
Dere05g1657 539 MobiDBLite consensus disorder prediction 489 509 - -
Dere05g1657 539 Gene3D Ribonuclease Inhibitor 88 474 IPR032675 -
Dere05g1657 539 SMART fbox_2 58 98 IPR001810 GO:0005515
Dere05g1657 539 Gene3D - 56 87 - -
Dere05g1657 539 FunFam F-box protein SKIP2 90 471 - -
Dere05g1657 539 SUPERFAMILY F-box domain 52 99 IPR036047 GO:0005515
Dere05g1657 539 SMART LRR_CC_2 144 169 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 170 194 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 298 323 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 428 455 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 403 427 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 195 228 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 377 402 IPR006553 -
Dere05g1657 539 SMART LRR_CC_2 324 351 IPR006553 -
Dere05g1657 539 CDD F-box_AtTIR1-like 55 93 - -
Dere05g1657 539 Pfam Leucine Rich repeat 144 167 IPR001611 GO:0005515
Dere05g1657 539 Pfam F-box domain 55 88 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1657 Dere-ChrDere05 26272737 26274356 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1657 05 26272737 26274356 Dere05g1657 05 26272737 26274356 ECH