Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1604 ATGGGTTTCCTCACTTTGCTCTGCATTTCTTGCCTCTGCCTTTCGTTCTTTCCCCTTTTCGCATCCCCTGCCCTGCTCTTTCAGGGTTTCAACTGGGAGTCAAGTAACTACAAAGGAGGATGGTACAACTCGCTCAAGAACACCATACCTGACCTCGCCCGTGCCGGGATCACCCACGTTTGGCTCCCTCCTTCCTCTCACTCTGTTGCTCCTCAAGGATACCTTCCGGGAAGGCTATACGATCTGGATGCATCACAATATGGTTCCAAGGAAGAACTCAAATCACTGATTGCAGCTCTCCATGAAAAGGGGATTAAGAGCGTGGCCGACATAGTCATCAACCACAGAACTGCAGAGAGGAAGGACGGGAGAGGAATTTATTGCCTCTTCGAAGGCGGCACTCCAGATTCCCGTCTCGATTGGGGTCCATCTTTCATTTGCAGAGATGACACTGCCTACTCTGATGGCACCGGAAATCTCGACAGTGGAGAGCCATACGACCCCGCACCAGACATCGACCATCTCAATCCTCAAGTTCAGAAAGAGTTATCAGATTGGATGAATTGGTTGAAGACCGAAATAGGGTTTGATGGGTGGCGATTTGACTTTGTGAAGGGCTATGCCCCCAATATTACCCAAATTTATATGCAACGAACCTCACCGGATTTCGCAGTTGGGGAAAAATGGGATTCTCTTTCTTATGGGAAAGATGGGAAGCCTGAGTACAACCAGGACGCTCATCGTGATGCGTTGGCCAATTGGGTGAAAGCTGCAGGTGGTGCTGTCACTGCCTTTGATTTCACAACCAAAGGGATTCTTCAAGCTGCTGTACAAGGCGAACTATGGAGGTTGAAGGATTCAAATGGGAAACCACCAGGCATGATCGGGATAAACCCAAAAAACGCCGTGACCTTCGTTGATAACCATGACACGGGTTCAACTCAGAAACTCTGGCCATTCCCTTCTGACAAAGTCATGCAAGGATACGCCTACATTCTAACGCATCCTGGAACCCCAACAATATTCTACGATCACTTGTTGGACTGGGGCCTGAAGGAGGAGATTGTGAAATTGAGTGAGATCCGGAGGAGCAATGGGATAAGTGTGAGAAGCTGTGTGAAAATTTTAGCAGCTGAAGCTGATCTCTATGTGGCTGAGATAGATAACAAGGTCATAACGAAGATTGGGCCAAAGAAGGATTCAGGAGGACTTATTCCCTGTAATTTCCAACTCGCTACCACTGGCCTAGATTATGCTGTGTATGTGGCCAGAAAGAAAAGACGACCATACTGTCTGGGACAGAGCATATTGAGTCTGTAA 1320 0.4811 MGFLTLLCISCLCLSFFPLFASPALLFQGFNWESSNYKGGWYNSLKNTIPDLARAGITHVWLPPSSHSVAPQGYLPGRLYDLDASQYGSKEELKSLIAALHEKGIKSVADIVINHRTAERKDGRGIYCLFEGGTPDSRLDWGPSFICRDDTAYSDGTGNLDSGEPYDPAPDIDHLNPQVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPNITQIYMQRTSPDFAVGEKWDSLSYGKDGKPEYNQDAHRDALANWVKAAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGINPKNAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPTIFYDHLLDWGLKEEIVKLSEIRRSNGISVRSCVKILAAEADLYVAEIDNKVITKIGPKKDSGGLIPCNFQLATTGLDYAVYVARKKRRPYCLGQSILSL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1604 439 SUPERFAMILY (Trans)glycosidases 26 352 IPR017853 -
Dere05g1604 439 PANTHER ALPHA-AMYLASE 30 421 - -
Dere05g1604 439 SMART alpha-amyl_c2 363 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Dere05g1604 439 PIRSF Alpha-amylase_plant 2 424 IPR013775 GO:0004556|GO:0005509|GO:0005975
Dere05g1604 439 Gene3D Glycosidases 25 366 - -
Dere05g1604 439 Pfam Alpha amylase, catalytic domain 52 342 IPR006047 GO:0005975
Dere05g1604 439 PRINTS Alpha-amylase signature 196 207 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g1604 439 PRINTS Alpha-amylase signature 104 115 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g1604 439 PRINTS Alpha-amylase signature 300 312 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g1604 439 Pfam Alpha-amylase C-terminal beta-sheet domain 365 420 IPR012850 GO:0004556|GO:0005509|GO:0005975
Dere05g1604 439 CDD AmyAc_arch_bac_plant_AmyA 26 371 - -
Dere05g1604 439 SUPERFAMILY Glycosyl hydrolase domain 367 421 - -
Dere05g1604 439 SMART aamy 24 362 IPR006047 GO:0005975
Dere05g1604 439 Gene3D - 367 423 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1604 Dere-ChrDere05 25744958 25746622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1604 5 421 Glycoside Hydrolase AT4G25000 68.258 0.0 582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1604 05 25744958 25746622 Dere05g1604 05 25744958 25746622 ECH