Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1280 ATGTACCACGCCAACGTAATTACCACGGTCTCTTTCCTGACTCAAGCCGAGCCTCAGCTTCGAGCCGGCTTGTCTCTGGAAGAACCAGCCGGAAAAGGTTCACGCTTTCTTAGTGCCTCTGTCTCTCTTTCTCTCTCTAAGCCGGGCCGGAAGTTCATCCTGAGCTTTAAAAGGTTCGCCGGAATGTGGAACTCACGCGCTCTCTCTCATCTGCGCACTCTGCTTCTTCTTCACTCGGTGGTAGCTCTGGTCTCTGCCCAGGGATCTACCAGAAACACTTGGAATACACTTAGCGGAAATCCACCATTAGTTGTAGCTCGTGGAGGGTTTTCCGGGATATTTCCTGATTCCAGCCTAGCTGCTTATAAGTTGGCATTATTAACCAGCCTACCAAGTGTTATTTCATGGTGTGATGTGCAATTAACAAAAAATGGAGATGGGATTTGTCTTCCTGATATGAAGCTTGACAATGCTACTGACATTTCCTCGATTTTTCAAAATAAATCTACCAACTACTTGGTTAATGGCGTGCCAACCCGTGGGTATTTTTCAGTGGATTACACGCTGAAGGACCTATCCCAAGTTTTCTTGACTCAGGGAGTCTACTCTCGAACTAACAAGTTTGACGGCAATATATTTCCAATTTATACTGTTGAGAATCTAGTTAAAGAAGTTGCTCCACCAGTCCTGTGGTTAAATATTCAGCATGATGCATTCTACAGGCAACACAATTTGAGTATGAGAACCTCCATACTTTCTATTTCCAAAAAAGTAGTCATCAATTATATCTCATCAGCTGAGGTTGGTTTCCTAAAAAGTATTGCAGCACGCTTCAACCCAAATATAACTAAACTGGTTTTCAGATTTATGGGACAGGATGAAACAGAACCATCAACCAATCAGACTTATGGCTCACTTCTAAAGAATCTTACATTTATCAAGACATTTGCTTCTGGAATTATGGTTCCCAAGGCTTACATATGGCCTGTAGATACTAGTAATTATCTACAACCACATACCACTTTGGTCTCTGATGCTCACAATGAGGGACTTGAAGTTTTTGGATCAGATTTTGTGAATGATGTTCCAATTAGCTATAATTACAGTTATGATCCTCTTGCTGAGTACCTTCAATTCATTGACAATGGTGATTTCTCTGTTGATGGTGTCCTGTCTGACTTCCCTATAACGCCATCTGCAGCTGTAGACTGCTTTGCTCACCTAGGTGCAAATGCCACAAAAATAGTTAATACTTTGGTTATCTCAAAATACGGGGCAAGTGGAGACTATCCTCCTTGTACTGACTTGGCCTACAACAAGGCCATATCAGATGGTGTGGATGTTCTCGATTGTCCTGTTCAACTGTCAAAGGATGGAACACCATTTTGCTTAAGCTCCATTGATCTCATAGAGAGCACAACAGTTGCCCAATCAAGTTTCAGCAGCCTTGCTACATCTATCCCTGAGATTAAGCCTGGCAGTGGCATATTTTCATTCAGTTTGACAGAAAATGATATCAGGAACTTGATCCCCTCAATATTGAACCCGTACACAAGATACACTCTGTATAGGAATCCAAAAAATAGGAATGTTGGGAAATTTCTGACGTTATCAGATTTCTTGTCCTTTACAAAAAATGAAACTTCTCTGCTTGGTGTCATGATCACTGTTGAGAATGCAGCCTATCTTGCAGAGAAGGTAGGATTAAGTGTGACCACTGCAGTCCTTCAAGCTTTGAGCAAAGCTGGTTATAATAAGCCAGGGTCACAAAAAGTTTTTATTCAGTCCACTAATAGCTCTGTACTGAAAGAATTCAAGAGTAATGCCAATTATGAGCTTGTCTATAAGGTTGATGAGAATGTTGGCGATGCTGTTAATGCAGCTGTTGAAGAGATCAAGGGCTTTGCAGATTCTGTGGTTGTTGACAAGTCATCTGTGTTTCCACTTAATTCAGCCTTTACGACTCGCTCTACAAACATTGTGTCAAAGCTAAAATCATTTAACCTCTCTGTCTATGTAGAAATTTTCGACAATGAGTTTGTGTCACAGGCTTGGGATTTCTTCTCAGATCCAACTGTGGAGATCAATTCATTTGTTCAGGGAGCAGAAATTAATGGTGTCATCACTGGCTTCACAAAGACAGCTAATAGATACAGAAGAAACCGGTGTTTGTCAGATAAAAATCCACCTCCTTACATGGAGGCCATCCAACCCGGTGCACTTTTGCAACTTGTTACCAAAGATTACTTGCCACCGGCTGAGGCTCCTCTCCCATCCCTGACAGAATCTGAAGTGTCAGAGCCACCTTTACCACCTGTTTCTAATCAGACAGCCCAGGCTCCTGGCCCTGCTACCGGAACCGGAGTAGGAACATCTCCACGTGGCAATGCACAGCCGAAGGTTACCATCTGCTTCTTGTTGTCCACTCTGGCTGTGTTCTTATCTTTCCTTCTCCTGCTTTGA 2463 0.4255 MYHANVITTVSFLTQAEPQLRAGLSLEEPAGKGSRFLSASVSLSLSKPGRKFILSFKRFAGMWNSRALSHLRTLLLLHSVVALVSAQGSTRNTWNTLSGNPPLVVARGGFSGIFPDSSLAAYKLALLTSLPSVISWCDVQLTKNGDGICLPDMKLDNATDISSIFQNKSTNYLVNGVPTRGYFSVDYTLKDLSQVFLTQGVYSRTNKFDGNIFPIYTVENLVKEVAPPVLWLNIQHDAFYRQHNLSMRTSILSISKKVVINYISSAEVGFLKSIAARFNPNITKLVFRFMGQDETEPSTNQTYGSLLKNLTFIKTFASGIMVPKAYIWPVDTSNYLQPHTTLVSDAHNEGLEVFGSDFVNDVPISYNYSYDPLAEYLQFIDNGDFSVDGVLSDFPITPSAAVDCFAHLGANATKIVNTLVISKYGASGDYPPCTDLAYNKAISDGVDVLDCPVQLSKDGTPFCLSSIDLIESTTVAQSSFSSLATSIPEIKPGSGIFSFSLTENDIRNLIPSILNPYTRYTLYRNPKNRNVGKFLTLSDFLSFTKNETSLLGVMITVENAAYLAEKVGLSVTTAVLQALSKAGYNKPGSQKVFIQSTNSSVLKEFKSNANYELVYKVDENVGDAVNAAVEEIKGFADSVVVDKSSVFPLNSAFTTRSTNIVSKLKSFNLSVYVEIFDNEFVSQAWDFFSDPTVEINSFVQGAEINGVITGFTKTANRYRRNRCLSDKNPPPYMEAIQPGALLQLVTKDYLPPAEAPLPSLTESEVSEPPLPPVSNQTAQAPGPATGTGVGTSPRGNAQPKVTICFLLSTLAVFLSFLLLL 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1280 820 CDD GDPD_SHV3_repeat_2 419 718 - -
Dere05g1280 820 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 416 719 - -
Dere05g1280 820 MobiDBLite consensus disorder prediction 756 793 - -
Dere05g1280 820 Pfam Glycerophosphoryl diester phosphodiesterase family 137 395 IPR030395 GO:0006629|GO:0008081
Dere05g1280 820 Pfam Glycerophosphoryl diester phosphodiesterase family 425 712 IPR030395 GO:0006629|GO:0008081
Dere05g1280 820 SUPERFAMILY PLC-like phosphodiesterases 100 400 IPR017946 GO:0006629|GO:0008081
Dere05g1280 820 MobiDBLite consensus disorder prediction 768 793 - -
Dere05g1280 820 ProSiteProfiles GP-PDE domain profile. 418 719 IPR030395 GO:0006629|GO:0008081
Dere05g1280 820 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 400 IPR017946 GO:0006629|GO:0008081
Dere05g1280 820 Gene3D Phosphatidylinositol (PI) phosphodiesterase 417 718 IPR017946 GO:0006629|GO:0008081
Dere05g1280 820 ProSiteProfiles GP-PDE domain profile. 102 402 IPR030395 GO:0006629|GO:0008081
Dere05g1280 820 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 72 781 - -
Dere05g1280 820 CDD GDPD_SHV3_repeat_1 102 401 - -
Dere05g1280 820 SUPERFAMILY PLC-like phosphodiesterases 418 719 IPR017946 GO:0006629|GO:0008081
Dere05g1280 820 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 100 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1280 Dere-ChrDere05 20818525 20826253 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1280 74 820 Receptor kinase-like Gene Family AT4G26690 56.684 0.0 873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1280 05 20818525 20826253 Dere05g1280 05 20818525 20826253 ECH