Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1151 ATGGAGCAACTCGGCCCCAACTCATCCAACTCGTGCCCACTCACTCCCTTAACGTTGTTGGAAAGAGCTGCCACTATCTACGGTGACTCTCCCTCCATTATCTACAATGACTCCTCTTACACTTGGTCTCTCACCCTCCGCCGTTGCCTCCGCCTCGCCTCCTCCCTTTCCTCCCTCGGCATCCGCCGTGGCCACGTCGTCTCCGTCCTCGCCCCCAATGTCCCTGCTGTGTACGAGCTCCACTTCGCCGTCCCATTCGCCGGAGCCATTCTCAACAACCTCAACATCCGCCTTGACCCCCGCACCGTCTCCGCCCTCCTCCGCCACAGCGAGTCCAAGCTCGTATTTGTTGATGAACAGTTCAAGCCCCTCCTTCTTCAAGCCTTGTCCTTCTTCCCTCCCAATGTTCATCCTCCTCTTCTCGTCCTCATCTCCGACCACGATAACGGGGAGGATTCTGAAATTGTTGGGTTTCTTGATAGCTACGAGGGGTTGATTAGGAAAGGTGATCCCGAGTTCAGGTGGGTCCGGCCTAAATCCGAGTGGGACCCGATTGTTTTGAACTATACATCCGGTACCACTTCGACTCCTAAAGGAGTTGTTCACTGTCACAGAGGAATCTTCATGGTCACTCTTGACTCTCTCGTAGACTGGTCGGTGCCCAAGCAGCCGGTGTACCTCTGGACCTTACCGATGTTCCACTCCAACGGGTGGAGCTTCACGTGGGGAATGGCAGCCGTCGGTGGGACCAACGTCTGTGTGCGTAGATTCGACGCGCCGACCATCTACCGTCTGATCGAAACCCACGGGGTCACCCACATGTGCGCCGCGCCAGTGGTGCTCAACATGCTATCCAGCTTCCACAGGTCCAAACCACTGAAAAACCCAGTTCATTTGCTCACCGGCGGGTCACCACCGCCTGAGACGGTTCTCTTCCGGACCGAATCCGTGGGGTTCGTGGTTAGTCACGGGTACGGGATGACCGAAACCTGCGGAGTCATCATCTCTTGCGCATGGAAGTCACGGTGGAACCACCTCCCGGCGACCGAAAGGGCGAGGCTGAAGGCGAGGCAGGGGGTGAGAACGTTATCGACAACAGAGGCCGACGTTGTGGACCCCAACTCCGGTCTCAGTGTGAAACCCGACGGGTCGTCAATTGGGGAAATCGTTCTGAGAGGGGCCTGCGTGATGTTGGGATACCTGAAGGACCCGAAGGGCACGTCGGAGTTGATAAACTCGAACGGGTGGTTCTACACCGGAGACTTGGGAGTGATTCACGAGGATGGGTACATAGAAATAAAGGACCGTCGGAAGGACGTGATTATAAGCGGCGGGGAGAATGTGAGCAGCGTGGAGGTGGAGGCGGTGCTGTACACGCATGCAGCGGTGAACGAGGCGGCGGTGGTGGCAAGGCCGGACGAATTCTGGGGCGAGACGCCATGCGCATTCGTGAGCTTGAAGAGTGGGTTGGACAGGAAGCCAACAGAGAAGGAGATAATGGGGTATTGCAGAGAGAAGTTGCCTCACTATATGGTGCCGAAAACGGTGGCGTTTAGGGAAGAGCTTCCAAAGACTTCGACTGGGAAGATTCAGAAGTATTTGCTAAGAAAGGAAGCGCAGGCTATGGGGTCGTTGACGGTTGCAGCTAGTCGGATGTGA 1659 0.5648 MEQLGPNSSNSCPLTPLTLLERAATIYGDSPSIIYNDSSYTWSLTLRRCLRLASSLSSLGIRRGHVVSVLAPNVPAVYELHFAVPFAGAILNNLNIRLDPRTVSALLRHSESKLVFVDEQFKPLLLQALSFFPPNVHPPLLVLISDHDNGEDSEIVGFLDSYEGLIRKGDPEFRWVRPKSEWDPIVLNYTSGTTSTPKGVVHCHRGIFMVTLDSLVDWSVPKQPVYLWTLPMFHSNGWSFTWGMAAVGGTNVCVRRFDAPTIYRLIETHGVTHMCAAPVVLNMLSSFHRSKPLKNPVHLLTGGSPPPETVLFRTESVGFVVSHGYGMTETCGVIISCAWKSRWNHLPATERARLKARQGVRTLSTTEADVVDPNSGLSVKPDGSSIGEIVLRGACVMLGYLKDPKGTSELINSNGWFYTGDLGVIHEDGYIEIKDRRKDVIISGGENVSSVEVEAVLYTHAAVNEAAVVARPDEFWGETPCAFVSLKSGLDRKPTEKEIMGYCREKLPHYMVPKTVAFREELPKTSTGKIQKYLLRKEAQAMGSLTVAASRM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1151 552 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Dere05g1151 552 Gene3D - 439 551 IPR045851 -
Dere05g1151 552 CDD ttLC_FACS_AEE21_like 13 537 - -
Dere05g1151 552 Pfam AMP-binding enzyme C-terminal domain 452 529 IPR025110 -
Dere05g1151 552 Gene3D - 4 438 IPR042099 -
Dere05g1151 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 3 438 - -
Dere05g1151 552 FunFam 2,3-dihydroxybenzoate-AMP ligase 438 543 - -
Dere05g1151 552 PANTHER ACYL-ACTIVATING ENZYME 2 545 - -
Dere05g1151 552 SUPERFAMILY Acetyl-CoA synthetase-like 12 540 - -
Dere05g1151 552 Pfam AMP-binding enzyme 21 443 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1151 Dere-ChrDere05 18544904 18546562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1151 1 542 EF-hand Containing Proteins AT1G21540 61.566 0.0 707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1151 05 18544904 18546562 Dere05g1151 05 18544904 18546562 ECH