Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1072 ATGGAAGCTGATACCGCAACGGCTAGGTGTGTCCTACTGCTACAACAGACTGTAAACAAATATGAAAAATCCCCATTAAGCTCCTTTAAAATAAAGGAGAAAAAAGGTGTTTGCCTTAACTCCTTGATTCGCTCTTCTGCTGCTACCTCTAGCTTGCTTGGTTACAGTGAAAGAAACTCCATCGATAGTGAATCTATGGCTCGGCATTTGCTTCTGCTGCTTTTTACAGCCCTTGTTGCAGCTGCTGATGAAGAACCATTCATTGGTGTGAACATTGGGACTGATCTCTCAGACATGCCACACCCTACTCAAGTGGTGGCACTACTTAAAGCCCAGCAAATCCGACATGTTCGATTGTACAATGCCGATCAAGCCATCCTGATTGCACTTGCAAAGACAGGCATTGAGGTTGTTGTGTCTGTCCCTAATGAAGAGCTTCTAGGAATAGGCCAATCAAATTCCACAGCAGCCAACTGGGTTTCCCGCAATGTAGCAGCACATTATCCAGCTACAAACATCACAGCCATTTGTGTTGGCTCAGAGGTCTTAACCACCCTCCCAAATGCAGCAAAAGTCCTTGTCAATGCCCTCAAGTACATCCACTCTGCCCTCGTGGCATCGAACCTGGATCGCAAAATCAAAGTCTCAACTCCACTCCCCTCCTCCATCATCCTTGACTCATTCCCTCCTTCCCAGGCCTTTTTCAATCGCTCAATGAACTCAGTTTTGGTCCCTATGCTTGATTTCTTGCAATCCACTGACTCTTACCTCATGCTTAATGTGTATCCTTACTATGATTACATGCAGTCCAATGGTGTTATAGCACTAGACTACGCACTCTTCAAGCCTCTCCCTCCAAACAAAGAAGCTGTGGACTCCAACACTCTCCTACACTACTCCAATGTTTTTGATGCAGTGGTTGATGCAGCCTACTTTGCCATGTCCTTTCTGAATTACACTAACATTCCTGTGGTGGTGACAGAGTCAGGCTGGCCCTCGAAAGGCGATTCAACCGAGCCTGATGCTACAGCTAACAATGCTAATACTTATAACAGTAATTTGATCAAACATGTGCTGAACAAAACTGGCACTCCCAAACATCCTGGGATTGCTGTTAGTACTTACATCTACGAGCTGTACAATGAGGATTCGAAGCCCGGGCCTGTGTCAGAGAAAAACTGGGGACTGTTCGATGTAAATGGGGCACCTGTTTATATTTTGCACTTGACAGGATCGGGAGCAATTTTGGCTAATGATACCACTAACCAGACTTTCTGTATTGTAAAGGATGGTGCTGACCCTAAGATGGTGCAGGCCGCACTTGATTGGGCATGTGGACCTGGGAAAGTGGATTGCTCTCCATTGCTTCAGGGACAACCTTGCTATGAACCAGACAATGTGCTTGCACATGCAAATTATGCTTTTGACACTTACTATGCTAAGATGGGGAAGTCTCCTGAGTCATGTAACTTCAATGGAGTGGCCACAATCTCCACCACAGATCCAAGTCATGGTTCATGTATATTTCCAGGAAGTGTTGGCAAGAATGGCACCTTGGCAAACATTACAGCACCATCAATGAATTCAACAAGTTCAGATTCTTCTGCCGACAATCTCCACAGCTGTAAACTGAGAATTAGAAGCCTTGTTATGGTGTTAGGATTTCTCATGTGGGGGCTGGTTGTGTAA 1689 0.4535 MEADTATARCVLLLQQTVNKYEKSPLSSFKIKEKKGVCLNSLIRSSAATSSLLGYSERNSIDSESMARHLLLLLFTALVAAADEEPFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYNADQAILIALAKTGIEVVVSVPNEELLGIGQSNSTAANWVSRNVAAHYPATNITAICVGSEVLTTLPNAAKVLVNALKYIHSALVASNLDRKIKVSTPLPSSIILDSFPPSQAFFNRSMNSVLVPMLDFLQSTDSYLMLNVYPYYDYMQSNGVIALDYALFKPLPPNKEAVDSNTLLHYSNVFDAVVDAAYFAMSFLNYTNIPVVVTESGWPSKGDSTEPDATANNANTYNSNLIKHVLNKTGTPKHPGIAVSTYIYELYNEDSKPGPVSEKNWGLFDVNGAPVYILHLTGSGAILANDTTNQTFCIVKDGADPKMVQAALDWACGPGKVDCSPLLQGQPCYEPDNVLAHANYAFDTYYAKMGKSPESCNFNGVATISTTDPSHGSCIFPGSVGKNGTLANITAPSMNSTSSDSSADNLHSCKLRIRSLVMVLGFLMWGLVV 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1072 562 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 75 497 IPR044965 GO:0004553|GO:0005975
Dere05g1072 562 Pfam Glycosyl hydrolases family 17 88 407 IPR000490 GO:0004553|GO:0005975
Dere05g1072 562 Gene3D - 418 511 - -
Dere05g1072 562 Pfam X8 domain 425 496 IPR012946 -
Dere05g1072 562 FunFam Glucan endo-1,3-beta-glucosidase 3 87 412 - -
Dere05g1072 562 Gene3D Glycosidases 87 413 - -
Dere05g1072 562 ProSitePatterns Glycosyl hydrolases family 17 signature. 322 335 IPR000490 GO:0004553|GO:0005975
Dere05g1072 562 FunFam Glucan endo-1,3-beta-glucosidase 4 419 513 - -
Dere05g1072 562 SUPERFAMILY (Trans)glycosidases 88 407 IPR017853 -
Dere05g1072 562 SMART X8_cls 424 509 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1072 Dere-ChrDere05 17160402 17163908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1072 82 553 Glycoside Hydrolase AT1G66250 73.629 0.0 742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1072 05 17160402 17163908 Dere05g1072 05 17160402 17163908 CCT
Dere05g1072 05 17160402 17163908 Dere05g1072 05 17160402 17163908 ECH