Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1067 ATGGCGACGGAAGAGGTTAATAAACCTCCATCTCTCCCTCCTTACCCTGAGATGATAATGAAAGCGCTTGAAGCACTGAACGAAGAGAATGGCTCGAACAAATCGGCGATATCAAAGTACATAGAGACCACCTACGGCGAGTTGCCGGCGGGCCACTCGGCGCTTCTGGCTCACCATCTTAACAAGATGAAAGAGGGTGGGGAGCTTGTGTTCTTAAAGAACAACTACATGAAGCCCGACCCGGATGCCCCGCCCAAGCGAGGCCGGGGCAGGCCGCCCAAGCCCAAGGTCCCTCTGCCTCCGGGCACCGTCCTGTCCCCACCCAGGCCCAGGGGCCGTCCTCCCAAGGACCCAAATACTTCGCCCAAGCCCAAAGCTTCAGCTGGCAGTGGCAGGCCCAGAGGCCGGCCCAAGAAGATTGCCCGGCCCACAACGGATAGCGACATCGGCAGTGGTAGGCCCAGGGGCCGGCCTCCGAAGGAAAAGCCCGCGTTGACTGAAGTTGTGGGAAAGAGTGTTATGTTATCCCTCATGACTGTTATTCTTGGTGATTTAGTGGCAAACATGATTGGAAGTGGGAGAATGCAAGCCTTAATTGTGACTTATATTCTGTTTATGTGGGCATGGGAAATTCCTCCAATTCTTACACCTTTTGATCTGAGACGTCCGGATTTGGTGTTTAGTTTCGTATGGGTTGAAGATCAAGCTGATTCCTTGATTCTTGGTGTCCCTATATCTAAAGTGGAGGCTGCCTCTATTGCTGCTTCTCTCTTAACTCTCAGTTGTTTCTCTCCATTCTGCTTCACCATTTCTTCCTCTTCATTCAGTCATTGCCCACGCTCCCTCTTTTCGTGCTACTCTGTTTCTCAGCAGTTAGAATAG 882 0.5215 MATEEVNKPPSLPPYPEMIMKALEALNEENGSNKSAISKYIETTYGELPAGHSALLAHHLNKMKEGGELVFLKNNYMKPDPDAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNTSPKPKASAGSGRPRGRPKKIARPTTDSDIGSGRPRGRPPKEKPALTEVVGKSVMLSLMTVILGDLVANMIGSGRMQALIVTYILFMWAWEIPPILTPFDLRRPDLVFSFVWVEDQADSLILGVPISKVEAASIAASLLTLSCFSPFCFTISSSSFSHCPRSLFSCYSVSQQLE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1067 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere05g1067 293 MobiDBLite consensus disorder prediction 74 165 - -
Dere05g1067 293 MobiDBLite consensus disorder prediction 94 121 - -
Dere05g1067 293 CDD H15 9 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere05g1067 293 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Dere05g1067 293 Gene3D - 7 89 IPR036388 -
Dere05g1067 293 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere05g1067 293 FunFam HMG-Y-related protein A 8 90 - -
Dere05g1067 293 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere05g1067 293 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dere05g1067 293 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dere05g1067 293 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dere05g1067 293 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Dere05g1067 293 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Dere05g1067 293 SMART AT_hook_2 152 164 IPR017956 GO:0003677
Dere05g1067 293 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Dere05g1067 293 PANTHER HISTONE H1 10 163 - -
Dere05g1067 293 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Dere05g1067 293 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Dere05g1067 293 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1067 Dere-ChrDere05 17100258 17102037 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1067 05 17100258 17102037 Dere05g1067 05 17100258 17102037 CCT
Dere05g1067 05 17100258 17102037 Dere05g1067 05 17100258 17102037 ECH