Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1038 ATGGTCTTATCTTACAATATCTCGTGTGGTAGGCACCATGCCTCTAAGTCGCTCGTTGCTACGCTCGGACTACGTTTAGGGAGGAGGACGCGTGAAGTGAAGGTGAAGGCCACGACTCTGTCTCTCTGTCCCTTCGGCTCGGCGTGCTTTCCGGAACTTGGGATTCCGATGGACGACGAGGTTCGCAGGATCTTCAACAAGTTCGACAAGAACGGTGACGGCAAGATCTCCTGCGCCGAGCTCAAGAAGATGCTGCTCACTCTTGACTCCAAAACGACGTCAAAGGAGATCAAGCGCATCATGGCCGAGATTGACAAGAACGGCGACGGTTACATTGATCTCAAGGAGTTCGCCGACTTCCACCATTCTCGCGGAGAAACCCTCGCCGACTCAAGGGAGCTCCGCGACGCCTTTGATCTGTATGATTTGGACAAGAACGGACTGATCTCGGCGACTGAGTTGCACGCGGTGCTGCGCAAGTTAGGGGAGAAGGGATCCATGAGCGACTGCCGGAAGATTATTAGCTCCGTCGACGCCGACGGCGATGGCAACGTCAATTTCGAGGAGTTCAAGAGAATGATGACTCGCGCCTAG 594 0.5455 MVLSYNISCGRHHASKSLVATLGLRLGRRTREVKVKATTLSLCPFGSACFPELGIPMDDEVRRIFNKFDKNGDGKISCAELKKMLLTLDSKTTSKEIKRIMAEIDKNGDGYIDLKEFADFHHSRGETLADSRELRDAFDLYDLDKNGLISATELHAVLRKLGEKGSMSDCRKIISSVDADGDGNVNFEEFKRMMTRA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1038 197 Gene3D - 125 197 - -
Dere05g1038 197 CDD EFh 60 122 IPR002048 GO:0005509
Dere05g1038 197 FunFam Calmodulin 1 59 197 - -
Dere05g1038 197 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Dere05g1038 197 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 133 195 - -
Dere05g1038 197 SMART efh_1 60 88 IPR002048 GO:0005509
Dere05g1038 197 SMART efh_1 169 197 IPR002048 GO:0005509
Dere05g1038 197 SMART efh_1 96 124 IPR002048 GO:0005509
Dere05g1038 197 SMART efh_1 133 161 IPR002048 GO:0005509
Dere05g1038 197 Gene3D - 50 124 - -
Dere05g1038 197 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Dere05g1038 197 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
Dere05g1038 197 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Dere05g1038 197 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Dere05g1038 197 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Dere05g1038 197 Pfam EF-hand domain pair 133 194 IPR002048 GO:0005509
Dere05g1038 197 Pfam EF-hand domain pair 60 120 IPR002048 GO:0005509
Dere05g1038 197 ProSiteProfiles EF-hand calcium-binding domain profile. 165 197 IPR002048 GO:0005509
Dere05g1038 197 CDD EFh 133 195 IPR002048 GO:0005509
Dere05g1038 197 SUPERFAMILY EF-hand 52 196 IPR011992 -
Dere05g1038 197 ProSitePatterns EF-hand calcium-binding domain. 178 190 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1038 Dere-ChrDere05 16720351 16721568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1038 59 195 EF-hand Containing Proteins AT1G18210 51.825 1.21e-46 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1038 05 16720351 16721568 Dere05g1038 05 16720351 16721568 CCT