Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1034 ATGGCTGCTCCGGAGCCCGTGAATATGGAAGCTTCGAACCTAACCTTCCAAGTGCCCTGTTCAGCGCAAGCTTCTTCTGTTGAAGCTCCGCTTCCGGCATCGTCTTCATTTGCAGCTGGACCTTCTGCGCCAGCTCAGCTCACATCCTCGGAGCCTTCTCCCATTCGTCTTCCAGAACATTTGATGCACAAAAATCGATTACAAGAATATACACAAAGGTCAAACATACGACTTCCCATTTATCAAACTGTCAATGAAGGACTTCCACATGCCCCACAGTTTAGGTCAACGGTGTGGGTTGATGGAAAGAGCTATACTTCTGAAAATGTTTTTTCTGTTCGTAAAGCTGCTGAACAGGATGCGGCCAGACTTGCTTTTGAGCGCATATCAGTAGAGATCAAAGATGAAGGGTTTCCTCCAATTTTTGAGAAAACTATGTTTTTCAAGTCTATATTGAATGAATATGCTGTGAAGATGAATCTGAATAAAATTTCATACAACACTGTTAAGCGGGAAGGGCTTCCTCTTTTTGTATCGTCTTTGGTTTTCAATGGTAAACGCTACACTGGTGATCCAGCTAAAAGCAAAAAGGAGGCTGAGCAATTAGCAGCACGTGCTGCTATTCTTTCAAATCTAGGCAATTCTGAGTCTGGAACACGTCTTTCTGAGATAATTAAGTCAAAATTCAAATTATGTACTGCAATCAACAATGTGAAGGCCTCAGAAGATACTAGTATTGTGTCACCTATGGAAAACAAAGGACATACCTCTGTTGGCGCAGCTCCTGTGGCTGCTAATATGAATAATGAAATGCAGATTTCACTTCCCAAGTGTTCTCATAGAGTGCTTCCTCCACAGCAAAAATTTCAGATGCCAAAACAAGATATATCTCCTGAAGGCTCCAAACTTCCAGATGTTTCTCTGCAGGCAGGTGCACAGCATCATATTGATGATAGTTCAAGTCCAAAAAAGCGGAAAAAGAACAAGAAAAAGGCTAATAAGAAGTCCCGGCTTGATTCTCTGCATGATTTAAAGAAAAGTATAGAGAAAAGGAAAAAGAGTTCCAAGATGAAACAAACTCAAGGAGGGCATTGCAAATTCTGCATCAATGGACAAGGCCATTGTTTCTGGGAACAATTTAGATTTATTGAGAGCGCAAAGTACTTGTCACGTTCAAGAAGGTTCCTTTTCTTTCTTCTGCTGTTTATTGGTGGGTTCTGCTTTGTGGGTACACGGTACCAATTGAATCCTATTGAAGTGGTGGGTTCTGCTTGGCCGCCAGTTGCTGCACAACCTCTCATCCAAGTCCCTCCTCCTTCAGCTGCACTTCCTCTCAACCAAGTCCTTCCTAGTTCATCAGCAACTCCTCTGAATGAAGTCCCCCCTTGTTCAGTGGCAGAGTAA 1404 0.4274 MAAPEPVNMEASNLTFQVPCSAQASSVEAPLPASSSFAAGPSAPAQLTSSEPSPIRLPEHLMHKNRLQEYTQRSNIRLPIYQTVNEGLPHAPQFRSTVWVDGKSYTSENVFSVRKAAEQDAARLAFERISVEIKDEGFPPIFEKTMFFKSILNEYAVKMNLNKISYNTVKREGLPLFVSSLVFNGKRYTGDPAKSKKEAEQLAARAAILSNLGNSESGTRLSEIIKSKFKLCTAINNVKASEDTSIVSPMENKGHTSVGAAPVAANMNNEMQISLPKCSHRVLPPQQKFQMPKQDISPEGSKLPDVSLQAGAQHHIDDSSSPKKRKKNKKKANKKSRLDSLHDLKKSIEKRKKSSKMKQTQGGHCKFCINGQGHCFWEQFRFIESAKYLSRSRRFLFFLLLFIGGFCFVGTRYQLNPIEVVGSAWPPVAAQPLIQVPPPSAALPLNQVLPSSSATPLNEVPPCSVAE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1034 467 SUPERFAMILY dsRNA-binding domain-like 63 129 - -
Dere05g1034 467 SMART DRBM_3 63 130 IPR014720 -
Dere05g1034 467 SMART DRBM_3 148 212 IPR014720 -
Dere05g1034 467 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 62 131 IPR014720 -
Dere05g1034 467 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 147 208 IPR014720 -
Dere05g1034 467 SUPERFAMILY dsRNA-binding domain-like 144 210 - -
Dere05g1034 467 MobiDBLite consensus disorder prediction 39 53 - -
Dere05g1034 467 MobiDBLite consensus disorder prediction 31 54 - -
Dere05g1034 467 Pfam Double-stranded RNA binding motif 64 127 IPR014720 -
Dere05g1034 467 Pfam Double-stranded RNA binding motif 149 208 IPR014720 -
Dere05g1034 467 CDD DSRM_SF 153 208 - -
Dere05g1034 467 PANTHER RIBONUCLEASE III 34 356 IPR011907 GO:0003723|GO:0004525|GO:0006364
Dere05g1034 467 MobiDBLite consensus disorder prediction 336 356 - -
Dere05g1034 467 Gene3D - 50 136 - -
Dere05g1034 467 Gene3D - 139 217 - -
Dere05g1034 467 MobiDBLite consensus disorder prediction 310 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1034 Dere-ChrDere05 16653210 16658549 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1034 05 16653210 16658549 Dere05g1034 05 16653210 16658549 CCT
Dere05g1034 05 16653210 16658549 Dere05g1034 05 16653210 16658549 ECH