Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1011 ATGCCTTTCATATCGCAAATTCAACGGCAATCCGATTACAATCTCTTCAGTTCCACCACTCCAATCGTCATTGACAATGGCGCCTCATATTTTCGTATCGGATGGGCAGGAGAGAACGATCCCCGTGTTGTTTTCCGCAACATTGTGCAAAGGCCACGCCATAAAGTCACTGGTGAAACTGTCACTATTGTTGGTGATCAGAATCCGGCATTAATGAAATACTTTGACTGCACTCGTTCTGGACCACGCTCAGCATTTGATAGCAATGTTGTGTACCAGTTTGAAATAATGGAATATATTCTTGACTTTGGATTTGACCGGATGGGCGCAAATGGATCTGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAATCCAGTTCAGTCTCGTAGTAAAATGGGAGAGCTTCTTTTTGAGACTTATGGAGTTCCATCAATAGCCTTTGGGGTTGATGCAGCTTTCAGCTATAAGTATAATCAACACCATGGAGTTTGCAATAAAGATGGTTTGGCTATGTGTCCTGGATTTAACACAACCCATGTGATTCCGTTTGTAGATGGGGAACCAGTTTATAAAGGATGCTGCCGTAGTAATATTGGTGGCTTCCATGTGACTGATTACTTAAAGCAACTTCTTTCACTTAAATATCCCTATCATTTGGCTAGATTTACATGGGAGAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAGGACTATGCCTCTGAAGCTCGGTTGTTTCAGAGAGGAGGCAAAGAAGCTGAAGAGAAAACCAGATCTTGGCAGCTCCCTTGGGTTCCACCACCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATTAGAGAGAAACAAGGTCAAAGGCTGCGAGAAATGGCTGAGGCAAAGAGATCATCCAGAATAAATGAACTGGAAAATGAATTGCATGGCTTGGAGTTTCTCTTACAGCAGCTTGAACAAGTAGAAGAGAGTGACATTCCGTCTTTCCTAGTAGATACTGGCTATGTCTCTAAGCAGGAGATAGAATCTTCCCGTATGAAGGTTACACAATCTTTACGGAAAGCAAAAGGTGAACCAAGGAGTGAACAAGCTGAAACAGAAAAGGCTGACTCTGCTACTAGCGAGAAGTATTCTCTTATAAACATCCCTGATGACGTGCTAACCCCAGAGCAGCTCATTGAAAAGAAGAAGCAATTATCGCTCAAATCCATGTCTGAAGGGCGGCAGCGATCAAAACAGAAACGTTATGAGGAGGAAATGGAACGAGAGAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCATGCTAAATACAAGGACCTATCAGAGAAGATTGACCAACGAAAACGTCTCAAGACAAATGGAAGCCATACAAATGGAAATAATTTGTCTGGTGGTGTGGGCCGTGGTGAGAGACTAAATGCTGCTCAAAGGGAAAGAATGCGCCTCTTGACAACTGCGGCCTTTGATCGTGGTAAAGGTGAGGATACATTTGGTGCCAAGGATGAAGATTGGCAACTGTACAAATTGATGAGTAAAGATAATGACGATGATGATGAGGGACCAGATGAGGATGAGGCAGAATTGGCCCGCATCTCTTCTAGGCTCCGGGACTTGGATCCAACATTTATACCAAAGTCAGAAACAGGTAATGCTCAATCTGCTGAGGTGCCACGTTTTCGTCCTCTCACCAAGGAGGATTTTCAGATTGTTCTTGGGGTCGAAAGATTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCACGTAGGATTAGACGAGATGGCTGGGGTCTCAATAAGGAGGTTACCATATAAGGATGAAAGTTTGGAAGAAAGACTAACTGATTCAATACTTGTGACTGGTGGAAGTTCTCTCTTTCCTGGTATCATCGAACGCCTGGAAGCTGGGATTCGGATGATAAGACCGTGCGGATCACCTATAAAACTAGTTAGAGCATTGGATCCAGTGATGGATGCATGGAGGGGGGCTTCTGCTTATGCCTCAGCCTCACAGTTTCATACGCAAACTTTTAGTAGGATGGATTATTTTGAAAAAGGTGAAGATTGGCTTCGCAGTTATCAACTAAAATATACATTGTAG 2169 0.4357 MPFISQIQRQSDYNLFSSTTPIVIDNGASYFRIGWAGENDPRVVFRNIVQRPRHKVTGETVTIVGDQNPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRMGANGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQHHGVCNKDGLAMCPGFNTTHVIPFVDGEPVYKGCCRSNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYIAQDYASEARLFQRGGKEAEEKTRSWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELHGLEFLLQQLEQVEESDIPSFLVDTGYVSKQEIESSRMKVTQSLRKAKGEPRSEQAETEKADSATSEKYSLINIPDDVLTPEQLIEKKKQLSLKSMSEGRQRSKQKRYEEEMERERKQQLEEEKRLENPELYLEQLHAKYKDLSEKIDQRKRLKTNGSHTNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEGPDEDEAELARISSRLRDLDPTFIPKSETGNAQSAEVPRFRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDHVGLDEMAGVSIRRLPYKDESLEERLTDSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKLVRALDPVMDAWRGASAYASASQFHTQTFSRMDYFEKGEDWLRSYQLKYTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1011 722 SUPERFAMILY Actin-like ATPase domain 170 715 IPR043129 -
Dere05g1011 722 Gene3D - 682 710 - -
Dere05g1011 722 Pfam Actin 587 714 IPR004000 -
Dere05g1011 722 Pfam Actin 19 364 IPR004000 -
Dere05g1011 722 MobiDBLite consensus disorder prediction 406 439 - -
Dere05g1011 722 Gene3D - 176 202 - -
Dere05g1011 722 Gene3D Actin; Chain A, domain 4 546 611 - -
Dere05g1011 722 Coils Coil 449 469 - -
Dere05g1011 722 MobiDBLite consensus disorder prediction 355 380 - -
Dere05g1011 722 Gene3D Actin; Chain A, domain 4 203 254 - -
Dere05g1011 722 Coils Coil 309 332 - -
Dere05g1011 722 Gene3D - 17 169 - -
Dere05g1011 722 FunFam Actin-related protein 5 203 257 - -
Dere05g1011 722 Gene3D - 612 681 - -
Dere05g1011 722 Coils Coil 421 441 - -
Dere05g1011 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Dere05g1011 722 FunFam Actin-related protein 5 18 170 - -
Dere05g1011 722 MobiDBLite consensus disorder prediction 352 384 - -
Dere05g1011 722 SUPERFAMILY Actin-like ATPase domain 18 159 IPR043129 -
Dere05g1011 722 PANTHER ACTIN 21 710 IPR004000 -
Dere05g1011 722 SMART actin_3 19 718 IPR004000 -
Dere05g1011 722 FunFam Putative actin-related protein 5 682 710 - -
Dere05g1011 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1011 Dere-ChrDere05 16328783 16335342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1011 588 709 Miscellaneous Gene Families AT2G42100 34.426 6.36e-16 78.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1011 05 16328783 16335342 Dere05g1011 05 16328783 16335342 CCT
Dere05g1011 05 16328783 16335342 Dere05g1011 05 16328783 16335342 ECH