Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0980 ATGAATGGAGAGGGATGTGAAGGAGGAGGGGACGCGGCGGCATTGCAAGAGGTCAAGGTCTACATGTGGGGCTACCTCCCTGGAGCTCTACCGCAGAGGTCGCCGCTGTTGACGCCGTTGCTTGTTAGGGTTCCGGCGTCGATTGGTTCTGCTGGTTACTCCTGGAAGGATATTTGCGGCGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGTTGGGAAAGCTCATCACATGGGGTTCAACTGATGATCTAGGTCAAAGCTATGTGACATCTGGCAAGCATGGGGAAACTCCTGAGCCTTTCCCTCTTCCAACTGAAGCTTCTATCATAATGGCTGCAGCTGGATGGGCACATTGTGTTGCTGTTACGGAAAGTGGTGAAGTTTACACATGGGGATGGAGGGAATGTGTTCCGTCTGGGAAGGTCTTTAGTGAAGCATCAACAGGGGTAAGTCTTGAAAAGGATGTATCAGAAAGGCAGAGTTCACTATTGACTGAGCAAGTGAGCCCTCGCTCGCAAAGTTCAAGATCCACTGGAGGAACTGCCTCCAGTGCTAGTGGAGAAGAAGGTACAAAGCGAAGGAAAGTTTCTTCAGCAAAGCAAACAGCTGAAAGCTCAACATCTGGTGATGATACTTTGACAGCATTCCCATGTCTCGTCACACTAAACCCTGGGGTAAGGATAACAAGTGTCGCTGCTGGTGGACGCCATACTCTGGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGCTTAGGCTCTAGAATACGCATGGTGTCCTCTCCTCATCTCATTCCTTGCATTAACACTTCTACATATGGAAAAGATAGATCTGTGGCACTTTCTCATGGAAGCATGAATTATGGGGGGCAGAATTTCAGAGTTCCTGGGAGTTATGTAAAGGGAATTGCATGTGGAGGTCGGCACAGTGCAGTTATCACAGATGCTGGAGCTTTGCTTACATTTGGTTGGGGACTATACGGACAGTGTGGGCAAGGTAGTACAGATGATGAGCTAAGCCCAACATGCGTATCTTCCTTATTGGGTATCCAAATAGAGGGAGTTGCTGCAGGATTGTGGCATACAGTCTGTATATCCACTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGACAGTTGGGAACCGGTGATGATCAAGCAGAGACTCTACCAAGGCTGCTGGATTCTCCGAGCTTGGAAAATCGGCATGCAAAGAGTGTTTCCTCTGGGGCTCGTCATACTGCTGTAATAACAGAGGATGGAAAAGTTTTTTGCTGGGGATGGAACAAGTATGGACAGCTTGGCCTTGGGGATGTGATTGACCGTAACATTCCTTCTCAAGTCACCATTGAAGGATGCGTCCCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTTGTCGAGTCACCCACTTGA 1452 0.4897 MNGEGCEGGGDAAALQEVKVYMWGYLPGALPQRSPLLTPLLVRVPASIGSAGYSWKDICGGGCGFAMAISELGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIIMAAAGWAHCVAVTESGEVYTWGWRECVPSGKVFSEASTGVSLEKDVSERQSSLLTEQVSPRSQSSRSTGGTASSASGEEGTKRRKVSSAKQTAESSTSGDDTLTAFPCLVTLNPGVRITSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCINTSTYGKDRSVALSHGSMNYGGQNFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISTDGDVYAFGGNQFGQLGTGDDQAETLPRLLDSPSLENRHAKSVSSGARHTAVITEDGKVFCWGWNKYGQLGLGDVIDRNIPSQVTIEGCVPKNVACGWWHTLLLVESPT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0980 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 311 321 IPR000408 -
Dere05g0980 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 73 125 IPR000408 -
Dere05g0980 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 324 IPR000408 -
Dere05g0980 483 Gene3D - 8 147 IPR009091 -
Dere05g0980 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 231 241 IPR000408 -
Dere05g0980 483 SUPERFAMILY RCC1/BLIP-II 213 481 IPR009091 -
Dere05g0980 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 430 IPR000408 -
Dere05g0980 483 MobiDBLite consensus disorder prediction 159 187 - -
Dere05g0980 483 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Dere05g0980 483 Pfam Regulator of chromosome condensation (RCC1) repeat 376 427 IPR000408 -
Dere05g0980 483 Pfam Regulator of chromosome condensation (RCC1) repeat 325 373 IPR000408 -
Dere05g0980 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 417 427 IPR000408 -
Dere05g0980 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 481 IPR000408 -
Dere05g0980 483 SUPERFAMILY RCC1/BLIP-II 19 134 IPR009091 -
Dere05g0980 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 363 373 IPR000408 -
Dere05g0980 483 Gene3D - 293 482 IPR009091 -
Dere05g0980 483 MobiDBLite consensus disorder prediction 159 209 - -
Dere05g0980 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Dere05g0980 483 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 35 479 - -
Dere05g0980 483 Gene3D - 197 292 IPR009091 -
Dere05g0980 483 Pfam Regulator of chromosome condensation (RCC1) repeat 112 134 - -
Dere05g0980 483 Pfam Regulator of chromosome condensation (RCC1) repeat 228 257 - -
Dere05g0980 483 PRINTS Chromosome condensation regulator RCC1 signature 109 122 IPR000408 -
Dere05g0980 483 PRINTS Chromosome condensation regulator RCC1 signature 426 447 IPR000408 -
Dere05g0980 483 PRINTS Chromosome condensation regulator RCC1 signature 366 384 IPR000408 -
Dere05g0980 483 PRINTS Chromosome condensation regulator RCC1 signature 231 247 IPR000408 -
Dere05g0980 483 PRINTS Chromosome condensation regulator RCC1 signature 128 144 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0980 Dere-ChrDere05 15876897 15883349 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0980 05 15876897 15883349 Dere05g0980 05 15876897 15883349 CCT
Dere05g0980 05 15876897 15883349 Dere05g0980 05 15876897 15883349 ECH