Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0935 ATGGCTATGGAGGATCCAAAGGTGAGCAGAATGAGCTCCCGCTTGACCGATGTGGTTCTGGACTGTGTTATGCCTTATATTCACGACCCCAAAGACCGGGATGCGATTTCTCTTGTTTGCCGGCGGTGGTACGAACTTGAATCCTTGACGCGAAAGCATGTGACGATTGCTCTATGCTACACGACGACCCCGGACCGTCTCCGTCGGAGATTTCCGCACCTGGAGTCGCTGAAGCTGAAAGGGAAACCGAGGGCGGCGATGTTTAATTTGATTCCCGAGGATTGGGGAGGTTATGTGGAGCCTTGGGTTAAAGAGATTGCAGTGTATTTTGATTGCTTGAAGTCGCTCCATTTTCGGCGCATGATTGTGAGGGACTCCGATCTTGAGCTTCTTGCGCGGTCACGGGGACACGTGCTTCAAGCTCTTAAACTCGACAAGTGTTCTGGTTTCTCCACGGATGGCCTCTGCCATATTGGTCGGTCTTGCAGAAATCTAAGAGTCTTATTTTTGGAGGAGAGCCAAATTACTGATAATGATGGCGAATGGCTACACCAGCTTGCGTTGAATAATACTGTTCTTGAGGCTCTAAATTTTTACACGACAGATCTTACCAGTATCAGGATTGAAGACCTTGAACTTATAGCAAGAAACTGCCGCAACTTAGTTTCTATGAAAATTACTGATATTGAAATTTTGGATCTTGTGAACTTCTTTCTTTCTGCATCTGCACTAGAAGAATTTTGTGGAGGTTCCTACAATGAGCAGCCAGAAAAGTACGCTGCTGTATCATTTCCCGCAAAGCTATGTCAATTGGGTCTAACATATATTGGAAAGAACGAGCTGCCAATAGTGTTCCCATTCGCAGCCCTTCTCAAAAAATTAGATCTCCTATATTCCATGTTAGATACTGAGGATCATTGTATATTAATCCAGAAGTGCCCCAACTTGGAAGTTCTTGAGTCAAGGAATGTAATTGGAGATAGAGGACTCGAAGTTCTTGCTCGAAGCTGCAAGAGGCTCAAGAGGCTCAGGATTGAGCGAGGAGATGATGAGCAAGGAATGGAGGACGAAGAAGGTGTTGTTTCTCAGAGAGGGTTAATTGCTTTGTCACAGGGCTGTCCAGTACTTGAATATCTGGCTGTTTATGTGTCTGACATAACGAATGCATCCCTGGAACATATTGGCACTCACTTGAAAAACCTCACTGATTTTCGCCTTGTCTTGCTGGACCGCGAGGCAACTATAACTGACTTACCTCTTGACAATGGGGTGAGGGCTTTATTAAGGGGCTGTGAGAAGCTCAGAAGATTTGCTCTGTATCTCCGTTCTGGGGGCTTGACTGATGTTGGCCTTGCCTACATTGGGCAATACAGCCAAAATGTGAGATGGATGCTCCTGGGTTATGTAGGGGAATCTGATGCAGGTCTTCTGGAGTTTTCTAAGGGGTGTCCTAGCCTTCAGAAGCTTGAGATGAGAGGCTGTTCCTTCAGTGAGTATGCACTAGCTGTTGCTGCCACACAACTAACTTCTCTAAGGTATCTATGGGTGCAAGGGTATAGAGCATCTGAAACTGGGCAAGATCTTTTGGCAATGGCAAGACCCTTCTGGAATATTGAGTTGATTCCTCCTCGAGGAGTTCTTGTTGCTTATCCAAACGGAGAATCTGTAATGGTTGAGCATCCGGCACATATTCTTGCATATTACTCTCTTGCAGGACAAAGATCAGATTGCCCAGATACTGTTACTCCTTTGGATCCAGCAGCATATGTCGAAGTTTAG 1779 0.4581 MAMEDPKVSRMSSRLTDVVLDCVMPYIHDPKDRDAISLVCRRWYELESLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGYVEPWVKEIAVYFDCLKSLHFRRMIVRDSDLELLARSRGHVLQALKLDKCSGFSTDGLCHIGRSCRNLRVLFLEESQITDNDGEWLHQLALNNTVLEALNFYTTDLTSIRIEDLELIARNCRNLVSMKITDIEILDLVNFFLSASALEEFCGGSYNEQPEKYAAVSFPAKLCQLGLTYIGKNELPIVFPFAALLKKLDLLYSMLDTEDHCILIQKCPNLEVLESRNVIGDRGLEVLARSCKRLKRLRIERGDDEQGMEDEEGVVSQRGLIALSQGCPVLEYLAVYVSDITNASLEHIGTHLKNLTDFRLVLLDREATITDLPLDNGVRALLRGCEKLRRFALYLRSGGLTDVGLAYIGQYSQNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFSEYALAVAATQLTSLRYLWVQGYRASETGQDLLAMARPFWNIELIPPRGVLVAYPNGESVMVEHPAHILAYYSLAGQRSDCPDTVTPLDPAAYVEV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0935 592 CDD F-box_AtTIR1-like 13 51 - -
Dere05g0935 592 FunFam Coronatine-insensitive protein 1 52 587 - -
Dere05g0935 592 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Dere05g0935 592 Gene3D Ribonuclease Inhibitor 52 588 IPR032675 -
Dere05g0935 592 SUPERFAMILY RNI-like 90 404 - -
Dere05g0935 592 FunFam F-box/LRR-repeat protein 4 13 51 - -
Dere05g0935 592 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 15 226 - -
Dere05g0935 592 Gene3D - 3 51 - -
Dere05g0935 592 Pfam F-box 13 53 IPR041567 -
Dere05g0935 592 SUPERFAMILY RNI-like 365 520 - -
Dere05g0935 592 SMART LRR_CC_2 431 457 IPR006553 -
Dere05g0935 592 SMART LRR_CC_2 483 506 IPR006553 -
Dere05g0935 592 SMART LRR_CC_2 313 336 IPR006553 -
Dere05g0935 592 SMART LRR_CC_2 373 397 IPR006553 -
Dere05g0935 592 SMART LRR_CC_2 136 161 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0935 Dere-ChrDere05 15301423 15305805 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0935 05 15301423 15305805 Dere05g0935 05 15301423 15305805 CCT
Dere05g0935 05 15301423 15305805 Dere05g0935 05 15301423 15305805 ECH