Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0897 ATGTCGAAACAGACTTACAGTGTGTGCTTCTGCTGCCGCCGGCGGTTCAAGCTGCCGGTGTCGGAGGCGCCGCCGGAGATCAAGAAGCTTTTCGACGACTTCTCTGAGAATGGCTTCATGACAGCTGCTCACCTTCAGAGGTTCTTGATTGAGGTGCAGAAGCAAGAGAATGCCACTGAGGAGGAAGCCCAGGCCATCATCGACGGCCTCAAGCATTTGATCATTTTTCATCGTAGGGGTTTCAATCTTGAGAGTTTCTTCAACTACCTCTTCAGTGACAGTAACCCACCTCTTTCACCTTCTTTTGGGGTGCACCAGGATATGACTGCACCCTTGTCTCATTATTTCATATACACCGGTCACAATTCCTATCTGACTGGAAATCAAATTAGTAGTGACTGCAGTGATGTCCCCATTATACATGCTCTGCAGAGGGGTGTGAGAGTGATAGAACTGGACATATGGCCTAATGCCGCAAAGAATGATGTCAATGTTCTTCATGGGAGGACGCTGACTACTCCTGTTGCGCTCATCAAATGTCTGAGGTCCATCAAGGAGCATGCCTTTATAGCGACTGAATATCCAGTTGTGATAACTCTGGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGATGGTCACCCAAACATTTGGAGACATACTATTTTCTCCTGGCTCAGAATGCTTGAAGGAATTTCCTTCTCCTGAATCGCTGAAAAGGAGGATTATTATATCAACCAAACCGCCTAAGGAGTACCTTGAGGCTAAAGAAGTAAAGGAAAAGGGGGACGAGATCACACAGAAGGCAAAGGCTTTAGATGATGATGAAGCTTGGGGGAAGGAAGTCCCAAGCATGAAAGTTGGTACTTTAGCTGATTACGAGAACCATGTAGATGTAGAAGACGTTAGTGAAGTGGAAGATCTTGACGAAGCAGATAAGTCACATCATAATGCAGCTCCTGAATATAGGCGTTTAATTGCCATTCATGCTGGGAAGCCCAAAGGTGGAATAGACGAATGTCTTAAAGTGGATCCTGATAAAGTGAGACGTCTAAGCTTAAGCGAGCAACAGCTTGAGAAGATTGCTGTAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATCCTGAGGGTGTATCCAAAAGGTACTCGCATTGACTCATCAAATTATAACCCACTAATTGGGTGGATGCACGGAGCTCAAATGGTTGCATTTAACATGCAGGGATATGGGAGATCACTATGGTTGATGCAAGGAATGTTCAAAGCCAATGGTGGATGTGGTTATGTTAAAAAACCAGATTTTCTACTGAAGACTTTCCCAAATAATGGGGTCTTCGACCCGAAAGCTAAGTTTCCTGTAAAGACTACTTTAAAGGTGACTGTATACATGGGGGAAGGATGGCATAATGATTTCCATAAGACTCACTTTGATCAATTCTCGCCTCCAGACTTCTACACAAGAGTGGGAATAGCTGGAGTACCGGCTGATTGTGTGATGAGAAAGACGAGAGCAATAGAGGATAATTGGTTGCCTTCTTGGAACGAGACATTTGAGTTCCCTCTTACGGTTCCTGAACTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGATATGTCAGAGAAAGATGACTTTGGTGGCCAAACATGCCTACCGATTTCAGAACTAAGAAGAGGAATTCGAACAATTGCACTACATGGCCAAAAGGGGGAGAAGTACAAATCTGTGAAGCTCCTTATGCGCTTTGAGTTTCATTAA 1773 0.4456 MSKQTYSVCFCCRRRFKLPVSEAPPEIKKLFDDFSENGFMTAAHLQRFLIEVQKQENATEEEAQAIIDGLKHLIIFHRRGFNLESFFNYLFSDSNPPLSPSFGVHQDMTAPLSHYFIYTGHNSYLTGNQISSDCSDVPIIHALQRGVRVIELDIWPNAAKNDVNVLHGRTLTTPVALIKCLRSIKEHAFIATEYPVVITLEDHLTPDLQAKVAEMVTQTFGDILFSPGSECLKEFPSPESLKRRIIISTKPPKEYLEAKEVKEKGDEITQKAKALDDDEAWGKEVPSMKVGTLADYENHVDVEDVSEVEDLDEADKSHHNAAPEYRRLIAIHAGKPKGGIDECLKVDPDKVRRLSLSEQQLEKIAVTHGKEIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKTFPNNGVFDPKAKFPVKTTLKVTVYMGEGWHNDFHKTHFDQFSPPDFYTRVGIAGVPADCVMRKTRAIEDNWLPSWNETFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPISELRRGIRTIALHGQKGEKYKSVKLLMRFEFH 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0897 590 Coils Coil 258 278 - -
Dere05g0897 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 106 250 - -
Dere05g0897 590 SMART plcy_3 325 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Dere05g0897 590 ProSiteProfiles C2 domain profile. 442 572 IPR000008 -
Dere05g0897 590 FunFam Phosphoinositide phospholipase C 457 590 - -
Dere05g0897 590 Gene3D Phosphatidylinositol (PI) phosphodiesterase 103 454 IPR017946 GO:0006629|GO:0008081
Dere05g0897 590 CDD PI-PLCc_plant 105 429 - -
Dere05g0897 590 PRINTS Phospholipase C signature 401 419 IPR001192 GO:0035556
Dere05g0897 590 PRINTS Phospholipase C signature 556 566 IPR001192 GO:0035556
Dere05g0897 590 PRINTS Phospholipase C signature 137 157 IPR001192 GO:0035556
Dere05g0897 590 PRINTS Phospholipase C signature 234 251 IPR001192 GO:0035556
Dere05g0897 590 PRINTS Phospholipase C signature 111 129 IPR001192 GO:0035556
Dere05g0897 590 PRINTS Phospholipase C signature 380 401 IPR001192 GO:0035556
Dere05g0897 590 Gene3D - 22 102 - -
Dere05g0897 590 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Dere05g0897 590 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 69 IPR015359 -
Dere05g0897 590 Pfam C2 domain 462 563 IPR000008 -
Dere05g0897 590 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 355 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Dere05g0897 590 SUPERFAMILY EF-hand 17 108 IPR011992 -
Dere05g0897 590 Gene3D C2 domain 457 590 IPR035892 -
Dere05g0897 590 CDD C2_PLC_like 460 589 - -
Dere05g0897 590 SMART plcx_3 106 250 IPR000909 -
Dere05g0897 590 SMART C2_3c 462 570 IPR000008 -
Dere05g0897 590 Pfam Phosphatidylinositol-specific phospholipase C, X domain 108 250 IPR000909 -
Dere05g0897 590 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 462 589 IPR035892 -
Dere05g0897 590 SUPERFAMILY PLC-like phosphodiesterases 106 443 IPR017946 GO:0006629|GO:0008081
Dere05g0897 590 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 589 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0897 Dere-ChrDere05 14699220 14704342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0897 1 589 Acyl Lipid Metabolism Gene Families AT3G55940 67.112 0.0 818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0897 05 14699220 14704342 Dere05g0897 05 14699220 14704342 CCT
Dere05g0897 05 14699220 14704342 Dere05g0897 05 14699220 14704342 ECH