Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0838 ATGGCTGATCAGTTAGCAAGGGCTGAGGAATTCGAAACGAAAGCAGAAAAGAAGCTTAATAGCTGGGGAATATTTGGCTCTAAATACGAGGATGCTGCTGATCTCTTTGATAAAGCTGCCAATTCCTACAAGCTTGCTAAATCATGGGATAAAGCAGGTTCGACATACATCAAGTTGGCAAATTGTTACTTGAAGGTGGAAAGCAAGCATGAAACAGCCCAAGCTTACGTTGATGCTGCTCATTGCTATAAAAAGACAAATGTAAATGAGGCTGTATCATGCTTAGACAAAGCAATTAATGCTTTCTGTGAAATCGGAAGACTCAGTATGGCTGCTAGATATTTTAAGGAAATTGCTGAATTGCATGAGTCTGAACAGAACATTGAGCAGGCTATTGTTTACTATGAAAAAGCGGCTGACTTTTTTGAAAATGAAGAAGTGACAACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAGTTTGCTGCTCAGCTTGAACAATATCAGAAGGCAATAGAGATTTATGAAGAGATAGCACGCCAGTCTCTTAACAATAATTTGTTGAAGTATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGTCAGCTCTGTAAAGGGGATGTCGTTGCTATAACCAATGCATTAGAGCGATATCAGGAATTGGATCCAACATTTTCTGGAACACGTGAATATAGACTTTTGGCGGATATTGCTGCTGCTATTGATGAAGAAGATATTGGGAAGTTTACCGATGTTGTTAAGGAGTTTGACAGCATGACCCCTCTGGATTCTTGGAAGACAACTCTTCTTTTGAGGGTGAAGGAAAAGCTGAAATCTAAAGAACTCGAGGAGGATGATCTTACCTAA 870 0.3977 MADQLARAEEFETKAEKKLNSWGIFGSKYEDAADLFDKAANSYKLAKSWDKAGSTYIKLANCYLKVESKHETAQAYVDAAHCYKKTNVNEAVSCLDKAINAFCEIGRLSMAARYFKEIAELHESEQNIEQAIVYYEKAADFFENEEVTTSANQCKQKVAQFAAQLEQYQKAIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDIGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKSKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0838 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Dere05g0838 289 Coils Coil 151 185 - -
Dere05g0838 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Dere05g0838 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Dere05g0838 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Dere05g0838 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Dere05g0838 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Dere05g0838 289 SMART tpr_5 152 185 IPR019734 GO:0005515
Dere05g0838 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Dere05g0838 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Dere05g0838 289 CDD SNAP 7 278 IPR000744 GO:0006886
Dere05g0838 289 SUPERFAMILY TPR-like 7 281 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0838 Dere-ChrDere05 13933186 13938644 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0838 05 13933186 13938644 Dere05g0838 05 13933186 13938644 CCT
Dere05g0838 05 13933186 13938644 Dere05g0838 05 13933186 13938644 ECH