LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g0819	ATGCTTATTAAGGGAAATAAAATTATTTCTAAATCTGAGCATAATAGTGATCCTGATGATAACTTGAGTATCCCATCTTTAGAGGATTGTTCAAATGTTGATGAGGATGTTGAATATGAAGGCCTTGCCAATTTGATAGAAGGTGTGTTTGTGAGTTTATTACATGATTATGATGATGTGTTTTCTGAAGAGGAATCTTATGGGTTATTACCATTTAGAAAGATTGAACATCATATTGATTTCATTCCAAGAGCACAAATTCCTAACAGGGCGATTAACAAAATCACTGTAAAGTATCGTTATCCTATTCTTAGATTAGATGATATGTTGGATGAACTGCATGGTGTATGTGTTTTCTCTAAACTTGATTTGAAAAGTGACTATCATCAAATTAAGGTGAAAGAAGGCTTTGTAGTAAGTTCAAAAGGAGTTAAGGTTGACTCTAAAAAGGTGAAGGTTGTCCACGAATGGCCAACGACTAAGTCTGTTAGTAAGGTGGAATATCTAGAAACATTTCCCTACATGATAAAATACAAGCAAGGAAAGGACAATGTGGTTGCTAATGCACTTTCAAGAAGATTGATGCCTTTGCCTTCAAGTGAAATTGCTAACCTAGATGGAAAGAATAAGGCTAAAATGGTTAAAGCAGTGCATGAAAAAGTACATGAGCCAATTGAAAAGAGGAATCGCATGTATGCTCAAAGAGCCATAATGGTTGAAACCAAGTTATTTTTTAGACAGGAGATTGGGTTTGGGTGCACTTATGAAAGGAGAGGTTTCCACAACAAAAGAAAATCAAAACTTAATGCAAGGGTGATGGACCATTTCAAGTGCTGGAAAAGATCAATAACAATGCTTACAAAATATATTTTCCAGTTTCAAGTTCTTCATAACCTTGGAATTTCGCATCACTGCACCCGCATAGAAAGGTCAATCATTACTCCAACTTCGAGAACGCTTTTCCGCAACCGCAAATCACGCTCTAAATCAACGCAAGAATGGGTCTGTCTCGGAAGTCCAAGCTCCAGCCTTTTGGCACCTTTAGCTGTGGATGCTTCTCTGAATTTCGCGTTTGCTTTCGTACTGGTTGTTGCTATGGCCGAACCCCAGGAGGTACCTGTCGAGGTGGTTCCGGGAACGCCTGGGATAAGGGAGGTGAGACCCGAGAAGGGGTCCGAAAAGATCAATGCTGGAAACGGTTCAAGTGGGAACCCGAATTTTGGAATAAGAAGGGTTGATCTGAGGGCTGAGATTGATACATCGCCGCCGTTCGGGTCAGTGAAAGAGGCCGTGACCCGCTTTGGAGGTAGCGGACCTTGGCTACCTCTATACAAGCTCGGGGAGGCCTTTAATGGCATTGAAAATTTTGACATAAAGAAAGTGGAGGAACAGGCAGCAGAGTTGGAGAAGGATTTGATAGTGAAAGAACTTGAAACACTTGATGTGCTTGAAGAACTTGGAGCTACTAAAAGGATAGTGGAGGAATTAAAGCAGCAGCTACAAAAAGAAGCACTGAAATGTTTTGCGACTCCTGAAGTCCATGCCTATGAACCGCTTGGTCCTCCTGTTATTAAGGAGATGAATAAGGAAAATTATGGAAATTCTGTCAACAGCCAAGACCAAATATTGCATGGTTCAAGCCCCTGCTCTATCTCATCACCTGATCTGATCTTAACGGAGTTAAAACAAGCTAAAGTGAATCTTGGTAAAACTATATATGATCTTGGAGTGATACAATCTTCTGTCGAATCTTTGAATAAGAAAATGAGGAAGGAGATTTTTCTTGAGAGGACACATGAAAAGCTAGCGTCCAAGTTTGCAGCTGATTCTGCTCAAGCAAGAGCTCAAGAACAAGTTAGGTTAAATCCATCAGCATCTCCTGTAGAAACAACTAGCAGTTTTGGCGAGCCTATGAACATTATGAGGAGTTTCAACTCTGACGTGGAGCAGTATAATAGAATGGTGGAAACAAGATCTGAAGTTTCAAATCCCTTCATTATGTATGAAGAGAATAGAATTGGTATTAAGACTGCGGAGATGAGGTGGCTTGCAGCTAAAAAGATGGAAGAAGCTGCAAGGGCAGCTGAAGCCATTGCTCTTGCTGAAATCAAGGCACTATCTAGCACTGAGAGATCATCAGGATTTGTCCTGCCCGTGCCTGAGAAAGTGAATTTTCCCCTAGAGGAGCACTCTCCTCTAACCCCCAAAGCTCAAATACCTGAAGAGTCAACCACTAAGAAGGTTATAGACTCCAGTTTTCAGACTGATGGAATAAGTATTTCTAAACTGACTGTTCTGAGAAGGATGAAGGAAGCAACAGAAGAAGTTCGACAGAGCAAGCAAGTCTTGATAGAGGCTTTGAACAGAGTTGAAACTGCAAACAGAAAGCAACATGCTGCTGAAGAGGCTCTGAGGAGATGGATTCCTGGGAATGATCCGAAGGGACAAGCAGTGTATAACTCTGTTAAGTGCAACAACTTCAATTTAGCTGGAAACTGTCAGGATTCATCTCTACCAGATGCAACAAGGTCAACCTCAGTGAACAACGATCCAAAACCAGCTTTAAGGCCAACAGTTTCAATGAGAGATGTGCTTAGCAGAAAGCAAGTTCCTGAAGAATATGGTACAAGAAAGGATATGGAAGAGCATACTGAAAGACAAAAGGTGGCTTTGAGTCAAATGCTGCGTGCATTAAGGGAAGATCTAACTCTTCCTCCGAAGACTGAGAAAGATGGGAGCGATCAGAAGCAGTTCATAGCCCAGAGGAAGAAATTTGGATTCATTCAAATATCGCTCCCCTTGGCAAAGCCAAGTAAGAGAAGGGCATGA	2829	0.4122	MLIKGNKIISKSEHNSDPDDNLSIPSLEDCSNVDEDVEYEGLANLIEGVFVSLLHDYDDVFSEEESYGLLPFRKIEHHIDFIPRAQIPNRAINKITVKYRYPILRLDDMLDELHGVCVFSKLDLKSDYHQIKVKEGFVVSSKGVKVDSKKVKVVHEWPTTKSVSKVEYLETFPYMIKYKQGKDNVVANALSRRLMPLPSSEIANLDGKNKAKMVKAVHEKVHEPIEKRNRMYAQRAIMVETKLFFRQEIGFGCTYERRGFHNKRKSKLNARVMDHFKCWKRSITMLTKYIFQFQVLHNLGISHHCTRIERSIITPTSRTLFRNRKSRSKSTQEWVCLGSPSSSLLAPLAVDASLNFAFAFVLVVAMAEPQEVPVEVVPGTPGIREVRPEKGSEKINAGNGSSGNPNFGIRRVDLRAEIDTSPPFGSVKEAVTRFGGSGPWLPLYKLGEAFNGIENFDIKKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEELKQQLQKEALKCFATPEVHAYEPLGPPVIKEMNKENYGNSVNSQDQILHGSSPCSISSPDLILTELKQAKVNLGKTIYDLGVIQSSVESLNKKMRKEIFLERTHEKLASKFAADSAQARAQEQVRLNPSASPVETTSSFGEPMNIMRSFNSDVEQYNRMVETRSEVSNPFIMYEENRIGIKTAEMRWLAAKKMEEAARAAEAIALAEIKALSSTERSSGFVLPVPEKVNFPLEEHSPLTPKAQIPEESTTKKVIDSSFQTDGISISKLTVLRRMKEATEEVRQSKQVLIEALNRVETANRKQHAAEEALRRWIPGNDPKGQAVYNSVKCNNFNLAGNCQDSSLPDATRSTSVNNDPKPALRPTVSMRDVLSRKQVPEEYGTRKDMEEHTERQKVALSQMLRALREDLTLPPKTEKDGSDQKQFIAQRKKFGFIQISLPLAKPSKRRA	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g0819	942	MobiDBLite	consensus disorder prediction	837	853	-	-
	Dere05g0819	942	MobiDBLite	consensus disorder prediction	383	403	-	-
	Dere05g0819	942	MobiDBLite	consensus disorder prediction	837	858	-	-
	Dere05g0819	942	Coils	Coil	483	503	-	-
	Dere05g0819	942	Pfam	Weak chloroplast movement under blue light	416	502	IPR008545	-
	Dere05g0819	942	Pfam	Weak chloroplast movement under blue light	641	807	IPR008545	-
	Dere05g0819	942	Gene3D	-	77	187	IPR043128	-
	Dere05g0819	942	SUPERFAMILY	DNA/RNA polymerases	53	166	IPR043502	-
	Dere05g0819	942	Coils	Coil	458	478	-	-
	Dere05g0819	942	Coils	Coil	769	803	-	-
	Dere05g0819	942	MobiDBLite	consensus disorder prediction	1	25	-	-
	Dere05g0819	942	PANTHER	HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED	416	503	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g0819	Dere-ChrDere05	13654392	13664991	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g0819	05	13654392	13664991	Dere05g0819	05	13654392	13664991	CCT
	Dere05g0819	05	13654392	13664991	Dere05g0819	05	13654392	13664991	ECH