Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0171 ATGGATCCAATCGAAGCAACAAAAGAGCTTGCTTTTCGAGTCGGGTTCTCCGGACACAGTGGACACCTCCGAGTGGAGCCGCTGTCGACGGTGGAGCGTTCCGACCCGTTGAGATCGCTTCCTGATTTCATTCTGCCACCTGCATTTCCAAAGGAGACACCTGAATCTATAAAGAATTATATAGAAGAGACATATCTTCGCCCAAGATTGGACCCTGATGAATTTTCACCTGAGAAAGCTGGGAAGCAGTGGGAATTTGATTGGTTTGACAAGGCTGAAGTGCCTCCGGAGCCATCTTTGCCACGAACTGTTGTGGTTCCAGTTTGGGAACCTCCATTTCGGCGCAGAAACAATGGTCAAGGAAAATGGGAACCAAAATCTGAGGAGGTGGATGTATCAGAACTGATGTCAGGAGCTGAAGAATCTGGGCCATTACCACGCAGTTCTGGGTCTACTAAGGACTTTGTAAGGGGAAGTATCAATAATCGCCCTTTTCGTCCAGGAGGTTTGGATGACTCCCAAACTTTAGACAGAATTCTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAGTTTTGAATGGTGGTCCTGCTCAGACAATTCCCCCAAGCTTAAAACAAGGGCTGGACCTTGGAGCACTAAAGCCATATCCTTGCTCGTGGACTGTTTACAAGAATGCAAGTTTGCCTAAGAGCTCACCAGATGTAAAACTGAGTGAGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAGGATGACGCTGCTACAGAACAAGAGGAAGATGGTCATTTATCAGAAGTGGAGTCTGTTACCTTGGAAGATGACGTTGACAAGGCTGAGGTATCTAGCAGAATGCATGAGAATGAGTTTTCATTAGATGAGATTTTGTTATCTGGATCAGAAGGATCCAAATTGCATTTCGATGGATTTAGTGGTGGTAGTGGACACAAGCAGAAAGAGGCTTGGGCTATTCGTGGAGGTAGCGAAGGAATAACAGATCACTTTCATGAACTGGTTCCTGATATGGCACTTGAGTTTCCCTTTGAATTAGATGCATTTCAGAAGGAGGCAATATATTATCTTGAGAAGGGAGAATCTGTTTTTGTTGCTGCTCACACATCAGCTGGAAAGACAGTAGTAGCAGAATATGCATTTGCTTTGGCATCAAAGCATTGTACTAGGGCTGTGTATACTGCTCCAATAAAAACCATCAGCAATCAGAAATATAGAGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTTACTGGTGATGTAAGCTTGAGGCCCGAGGCTTCTTGTCTCATCATGACTACTGAAATTTTAAGGTCAATGCTCTATCGGGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGATGAAGTGCATTATGTCAATGATGTTGAAAGAGGTGTTGTTTGGGAAGAAGTAATTATCATGCTTCCAAGACACATCAATATCATCCTCCTTTCAGCCACGGTACCTAATACAGTTGAATTTGCTGATTGGATTGGTCGGACAAAACAAAAGGAAATCCGGGTTACAGGGACAACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTGTACAAAATTTGTGAAAGTGAAACACTTCTGCCTCAGGGACTGAAAGCTGCGAAGGATGCATTCAAGAAAAAGAATTCAATTGCTGGTGGTGGTGGTTCTGGACAATATTCAGGGACTTCAGCAGGTCATGACAATACTCGGCTTCAAAAACGTGAAAATGCAGCTCGAGGGAAACATGGAAGTAGTTTTTCCAAAACTGCCAGAGGCTATCAGAATAATGGGAATGGCCAGAACAGTTGGGAACTCAGGAGAGCTGAAGCTTCCATGTGGTTGATGCTTATTAAAAAGCTCTCCAAAAAGTCACTGTTGCCTGTGGTCATATTTTGTTTTTCCAAGAATCGCTGTGATAAATCAGCTGATAATATGACAGGAACTGACCTAACTAGTAGCTCAGAGAAAAGTGAGATCCGTGTTTTCTGTGATAGAGCATTTTCAAGACTTAAAGGATCTGACAGAAATTTACCACAGGTCATTCGAGTCCAGAATCTTCTTCGTAGAGGAATTGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTAGTTGAAATGCTGTTTTGCCGTGGTGTTATCAAGGTCTTGTTTTCAACAGAGACATTTGCAATGGGAGTCAACGCTCCTGCTAGAACAGTAGTCTTTGATACTTTAAGGAAGTTTGATGGCAAGGAATTTAGGCAGTTACTACCAGGAGAATATACTCAAATGGCTGGACGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTGTTCTAATGTGCCGTGATGAAATCCCAGAAGAAGCCGATTTAAAGCATGTTATCATTGGAAGTGCTACCCGTCTTGAATCTCAATTTCGTCTTACCTATATGATGATCCTCCATCTTCTGCGAGTTGAAGAATTGAAGGTGGAGGATATGTTGAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCAGAAATGCAGCAACTTTTGAAGCGAAAGCTTAATCAGCCTACAAAAATTATTGAATGTATAAAGGGTGAGCCAACCATCGAGGAATACTACGAGATATACTCTGAAGCTGAGAAGCACAGTAACAAAATATCAGAGGCAATTTTGCAGTCCAATAATGCCCAACAGTTTCTCATTCCTGGCAGAGTTGTAGTCGTAAAATCAGAATCAGCCCAGGATCACTTGCTTGCTGTGATTGTGAAAACACCTTCAGCAAATCATAAGCAGTACATTGTTTTAGTGCTCAAACCTGGTTTGCCATCCCCAGTGGAAAATGCCCCTTGTAGTGGTAATTCAAAAGATAAAAGCAGTGACTTCAACCAAGGTTATTTTGTGTTGCCTAAATCAAAACGCGGTCTTGAAGATGAATATTCTACCTCTGTTTCGGCTCGTAAAGGAACAGGTGTTATTAACATCAAACTACCTCATCGTGGGTATGCTAGTGGAATGAATTATGTGGTTCAAGAAGTTGAAAGTAAAGAATTTGTATGCATTTGTAATAGTAAAATCAAAATTGATCGAGTTGGACTTCTTGAAGAAATTAACAATGCTACTTACTCCAAGACAGTTCAAATGCTCCTGGATTTGAAATCAAATGGAAATAAGTACCCACCAGCCCTGGATCCTATAAAAGATCTAAAGTTGAGGGATGTTGAACTAGTGGACACATACCGCAAATGGACTAGATTATTGGAGAAGATGACCCTGAATCAGTGTCATGGATGTATAAAATTGGAAGAGCACATTAAATTGGCGAAAGATATACGAAAGCACAAAGAAGAAGTCAACGATCTTCAATTTAAAATTTCAGATGAGGCACTTCAACAAATGCCAGACTTTCAGGGCCGGATTGATGTTCTAAAGGAAATTGGCTGCATAGATGATGACCTTGTTGTACAAATGAAAGGCCGCGTCGCCTGTGAGATGAACTCTGGGGAAGAATTGATATGCACCGAGTGCTTGTTTGAGAATCAACTGGATCACCTGGAACCGGAAGAAGCAGTAGCATTAATGTCTGCTTTTGTGTTTCAGCAAAAGAACACTTCTGAACCATCGCTCACATCGAATCTGGCTGATGCAAAACATAAATTGTACAATACAGCAATAAGACTTGGACAGCTTCAAGTGGAAAAAGGACTACCAATAAGTCCCGAAGAATATGCCCAAGAAAATCTCAAGTTTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCATTTGCTGACATCTGTGAGCTCACTGATTTTCCTGAAGGCTTGATAGTTAGGACCATTGTGAGACTGGACGAGACATGTCGGGAGTTTAAAAATGCTGCAGCTATTATGGGTAATTCTGCTCTCTGCAAGAAAATGGAAATTGCTTCCAATGCAATTAAGCGTGACATTGTTTTTGCAGCTAGCTTGTACATTACTGGCGTATGA 4029 0.4182 MDPIEATKELAFRVGFSGHSGHLRVEPLSTVERSDPLRSLPDFILPPAFPKETPESIKNYIEETYLRPRLDPDEFSPEKAGKQWEFDWFDKAEVPPEPSLPRTVVVPVWEPPFRRRNNGQGKWEPKSEEVDVSELMSGAEESGPLPRSSGSTKDFVRGSINNRPFRPGGLDDSQTLDRILPEGASNGEWVREVLNGGPAQTIPPSLKQGLDLGALKPYPCSWTVYKNASLPKSSPDVKLSELSLQFDDLFKKAWEDDAATEQEEDGHLSEVESVTLEDDVDKAEVSSRMHENEFSLDEILLSGSEGSKLHFDGFSGGSGHKQKEAWAIRGGSEGITDHFHELVPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESETLLPQGLKAAKDAFKKKNSIAGGGGSGQYSGTSAGHDNTRLQKRENAARGKHGSSFSKTARGYQNNGNGQNSWELRRAEASMWLMLIKKLSKKSLLPVVIFCFSKNRCDKSADNMTGTDLTSSSEKSEIRVFCDRAFSRLKGSDRNLPQVIRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVLMCRDEIPEEADLKHVIIGSATRLESQFRLTYMMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLKRKLNQPTKIIECIKGEPTIEEYYEIYSEAEKHSNKISEAILQSNNAQQFLIPGRVVVVKSESAQDHLLAVIVKTPSANHKQYIVLVLKPGLPSPVENAPCSGNSKDKSSDFNQGYFVLPKSKRGLEDEYSTSVSARKGTGVINIKLPHRGYASGMNYVVQEVESKEFVCICNSKIKIDRVGLLEEINNATYSKTVQMLLDLKSNGNKYPPALDPIKDLKLRDVELVDTYRKWTRLLEKMTLNQCHGCIKLEEHIKLAKDIRKHKEEVNDLQFKISDEALQQMPDFQGRIDVLKEIGCIDDDLVVQMKGRVACEMNSGEELICTECLFENQLDHLEPEEAVALMSAFVFQQKNTSEPSLTSNLADAKHKLYNTAIRLGQLQVEKGLPISPEEYAQENLKFGLVEVVYEWAKGTPFADICELTDFPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNAIKRDIVFAASLYITGV 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0171 1342 MobiDBLite consensus disorder prediction 591 614 - -
Dere05g0171 1342 FunFam DExH-box ATP-dependent RNA helicase DExH11 526 816 - -
Dere05g0171 1342 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 143 1322 - -
Dere05g0171 1342 FunFam DExH-box ATP-dependent RNA helicase DExH11 817 884 - -
Dere05g0171 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 796 IPR027417 -
Dere05g0171 1342 Gene3D - 318 525 IPR027417 -
Dere05g0171 1342 FunFam Ski2 ATP-dependent RNA helicase 1114 1339 - -
Dere05g0171 1342 CDD SF2_C_Ski2 632 795 - -
Dere05g0171 1342 PIRSF SKI2 48 1339 IPR016438 GO:0003723|GO:0003724|GO:0006401
Dere05g0171 1342 MobiDBLite consensus disorder prediction 117 133 - -
Dere05g0171 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 632 830 IPR001650 -
Dere05g0171 1342 MobiDBLite consensus disorder prediction 144 158 - -
Dere05g0171 1342 SMART helicmild6 697 783 IPR001650 -
Dere05g0171 1342 MobiDBLite consensus disorder prediction 115 175 - -
Dere05g0171 1342 Gene3D - 1120 1339 - -
Dere05g0171 1342 Gene3D - 817 906 - -
Dere05g0171 1342 Pfam DEAD/DEAH box helicase 357 504 IPR011545 GO:0003676|GO:0005524
Dere05g0171 1342 FunFam ATP-dependent RNA helicase SKI2 318 525 - -
Dere05g0171 1342 SMART ultradead3 350 530 IPR014001 -
Dere05g0171 1342 Pfam DSHCT (NUC185) domain 1165 1334 IPR012961 -
Dere05g0171 1342 Pfam rRNA-processing arch domain 838 1138 IPR025696 -
Dere05g0171 1342 Gene3D - 526 816 IPR027417 -
Dere05g0171 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 517 IPR014001 -
Dere05g0171 1342 Pfam Ski2 N-terminal region 79 218 IPR040801 -
Dere05g0171 1342 SMART DSHCT_2 1161 1339 IPR012961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0171 Dere-ChrDere05 2187141 2227547 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0171 05 2187141 2227547 Dere05g0171 05 2187141 2227547 ECH