Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1625 ATGAGTGCAGTTCCGACAGAGACAATTGAAGTCATTGCACAGAGCATTGGCATCACCAATTTGTCCCCTGATGTCGCCCTGGCTCTCGCTCCCGATGTCGAGTATAGGGTTCGGGAAATCATGCAGGAGTCCATAAAATGCATGCGCCACTCAAAGCGAACTATTCTTACGTCAGATGATGTGGATGGTGCACTTAAATTGAGAAATCTGGAGCCGATATATGGTTTCACCTCTAACGATCCTCTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGATGTAGATTTTAAGGATGTTATTGAAGCACCACTACCAAAAGCACCCCTTGATACATCAATTACCACTCACTGGCTGGCAATTGAAGGTGTACAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCTCCCTCTGAGACCAGAAAATCTGAATATAAGGAAGATGGTCTTCCCGTTGATATTAAATTACCTGTTAAGCATATAATTTCAAGAGAGCTTCAGCTTTACTTCAACAAAATAACTGAGTTGATATCAAATAAGCCAGGCTCTATTCTCTTTAATAAAGCATTAATTAGCTTGGCAACTGACTCAGGGCTCCATCCTTTGGTTCCTTATTTCTCATACTTTGTTGCTGATGAGGTGACACGAAATTTGAATAATCTAAATCTTTTATTTGCTTTGATGCGTCTTGTTCGGAGCCTTACACAAAATCCTCACATACACATAGAGCCTTATTTACATCAATTGATGCCTTCTATTATGACCTGCCTTGTTGCAAAAAGGCTAGGGAATAGACTATCTGATAATCACTGGGAGCTTAGAAACTTCAGTGCAAACCTGGTTGCTTCAATATGCAAAAGGTTTGGACATGTTTATCACAATCTTCAGCCACGTGTGACCAAGACATTGCTTCATGCTTTCTTGGACCCTACAAAATCTCTACCTCAACATTATGGTGCAATTAAAGGGATAGCAGCTCTTGGATCCAGCATGGTTCGCATGCTTATACTTCCAAATCTTGAGCCATATCTACATCTTCTTGAGCCAGAAATGCAACCTGAGAAACAAAAGAATGAGTTGAAGAGGCATCAAGCATGGCAAGTTTATGGTGCCTTGCTGTGTGCAGCAGGCCAATGTATTCATGATAGGGCCAGAACATTCAGCAGTTTGCTCTCTCCTCCTCCAAATCGTGGTTTTTCAAGAGGCCATGGAAAAGTCATGACAGCCACGCCAAGCAAACGTAAAGCCAGCACAGACAATCTAATGCAGCAACCTCGGCTGAAGAAGATTGCTACAGATGGTCCTGGGGGTTTGATGGCGATGAACTCCATGCCAGTTGACATGCAAGGGACACCTGGTGGATTTTCAACTACAACGGTAGCTTTGAACTATGGCAGAGCATCAGTGGCTCATCAGTTATTAAATGAAAAAGCCCCGGGAAGAGAGGTTGGAGCTCAACAAGTCAAGGTATCTGCCACTCTTGCTCAGGCTTGGAAGGATGACATAGATGCTGGACATTTGCTATCATTAGTGCATGAACTATTTGGCGAAAGTGTGCTCTCCTTCATTCCAAAAGCTGAGGCATCTATATTCTTGTGA 1617 0.4292 MSAVPTETIEVIAQSIGITNLSPDVALALAPDVEYRVREIMQESIKCMRHSKRTILTSDDVDGALKLRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVDFKDVIEAPLPKAPLDTSITTHWLAIEGVQPAIPENAPVEAPSETRKSEYKEDGLPVDIKLPVKHIISRELQLYFNKITELISNKPGSILFNKALISLATDSGLHPLVPYFSYFVADEVTRNLNNLNLLFALMRLVRSLTQNPHIHIEPYLHQLMPSIMTCLVAKRLGNRLSDNHWELRNFSANLVASICKRFGHVYHNLQPRVTKTLLHAFLDPTKSLPQHYGAIKGIAALGSSMVRMLILPNLEPYLHLLEPEMQPEKQKNELKRHQAWQVYGALLCAAGQCIHDRARTFSSLLSPPPNRGFSRGHGKVMTATPSKRKASTDNLMQQPRLKKIATDGPGGLMAMNSMPVDMQGTPGGFSTTTVALNYGRASVAHQLLNEKAPGREVGAQQVKVSATLAQAWKDDIDAGHLLSLVHELFGESVLSFIPKAEASIFL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1625 538 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 535 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Dere04g1625 538 CDD TAF6C 165 381 IPR011442 GO:0006367
Dere04g1625 538 SMART TAF_cls 2 68 IPR004823 -
Dere04g1625 538 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Dere04g1625 538 FunFam transcription initiation factor TFIID subunit 6 164 369 - -
Dere04g1625 538 Pfam TATA box binding protein associated factor (TAF) 1 66 IPR004823 -
Dere04g1625 538 SUPERFAMILY ARM repeat 202 403 IPR016024 -
Dere04g1625 538 Gene3D - 164 369 IPR046344 GO:0006367
Dere04g1625 538 Gene3D Histone, subunit A 1 67 IPR009072 GO:0046982
Dere04g1625 538 SUPERFAMILY Histone-fold 4 76 IPR009072 GO:0046982
Dere04g1625 538 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Dere04g1625 538 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1625 Dere-ChrDere04 18271729 18277260 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1625 04 18271729 18277260 Dere04g1625 04 18271729 18277260 ECH