Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1610 ATGCTTCCACAGCGTATGAAGAAGACCATCACTGATAACCCGAAGAAGCTCGCCAACCTGATTGATCTAGTCAATCTTCCATCGACACTTCGAGAATTTGTGGGTCAATCTCAGATTTCTCGGTTAGGTTGTTTTATGCGCGTTTGGTCCTACATCAAAACCAATAATCTCCAGGATGCTAACAATAAGAATGTGGTGAACTGTGATGAAAAGCTGAGAAGTATTTTGTTGGGGAAATCTCAGGTGGAGCTGGCAGAACTTCCTGAGCTTCTCAAGCTGCATTTTCCAAAAGCACCGAAGTAA 303 0.4323 MLPQRMKKTITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDANNKNVVNCDEKLRSILLGKSQVELAELPELLKLHFPKAPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1610 100 CDD SWIB-MDM2_like 24 95 - -
Dere04g1610 100 SMART swib_2 20 100 IPR019835 -
Dere04g1610 100 SUPERFAMILY SWIB/MDM2 domain 16 98 IPR036885 -
Dere04g1610 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Dere04g1610 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 11 100 - -
Dere04g1610 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Dere04g1610 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dere04g1610 SWIB 5.9e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1610 04 18129686 18131022 Dere04g1610 04 18129686 18131022 ECH