Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1569 ATGGAGAAATTGAGAAGACTGGTGACTGAGATAGCTTACGCTCACAGTCACGCTAATCTTCCTCCTCTTCAACGCTCTCTTGTCCCTTTCCTTTCTGCTGCTTCTTCTCTCTACAAGCTCGCTCTTTCTCTTCGCCACTATTTCTACAAAGTTGGCTTCTTTGAAAGGCACCAGTTACCCATACCGGTTATTAGTGTCGGGAATTTGACATGGGGAGGCAATGGGAAGACACCGATGGTTGAGTTCATCGCCCTCTGGTTAGCTGATTGTGGAATTCAACCGCTGATTATTTCAAGGGCTTTGCACGCAGAGTCTATTAAGGCTGGTTCAGACAGTGATGTAATGATTGGAACTGCATTAATTGGTATTTATGCTAAGTGTGGTGCTGTTCATGATTCGCGTCAGTTGTTTGAAGCTATGCCTGAGAAAAATGTTGTCACTTGGAATGCCATGATTAGTGGGTACTTAAAAAATGGGGATACAAATTCTGCTTCAATTCTATTTTACAAGATGCCTGGACAAACAGAAGTAACTTGGAGTCAGATGATTGATGGATTTGCAAGGAATGGTGAAATCGTTACTGCTAGGCAATTTTTTGATAATGTTCCACTCATGTTGAAAAATGTGGGAACATGGACTGTTATGGTTGATGGGTATGCTAGAAGTGGGAAGATGGAAGCAGCCAGGGAGATCTTCGAGCAGATGCCTCAGCGGAATTTCTTTGTTTGGTCATGTATGATTTGTGGGTACTCAAAGATAGGTAATGTGAAAGAGGCCAAGGCCATTTTTGGACGGGTCCCAGTCCGGAATTTGGAGATTTGGAATTCCATGATTTCTGGGTATGTCCATAACGGATTTGGTGAGGAAGCTCTGCAAACATTTGTTAATATGCAAGCTGAAGGGTTTCTGCCAGATGAGTTTACTGCTGTTAGTATTTTATCTGCTTGTGCTCAGCTAGGGATTCTAAATGTTGGGAAAAAAGTCCACCATATGATAAGACATAAAGTGATAAAAATTAATCAGTTTGTTGCAAGTGGATTAATTGACATGTATGCAAAATGTGGGGACTTAATCAATGCAAGGTTGGTCTTTGAAGAGTTTACTGAAAGGAACATCTTCTGCTGGAATGCAATGATATCTGGTTTTGCCATCAATGGAAAATGTCTTGAGGTTCTTGAGTTTTTCGGCAGAATGGAGAATTCAAACATAGGGCCTGATAGTATCACCTTCCTTACTGTACTCACAGCTTGTGCTCATGGCGGTTTTGTCAATGAAGCTTTGGAAGTAATATCCAAAATGCAGAAATGTGGATTGGAATTAAGCATCAAGCATTATGGATGCATGGTTGATCTCTTGGGGCGAGCAGGGAGATTAAAGGAGGCTTATGAATTGATAAAAAGAATGCCAATGAAACCCAATGACACAATATTGGGGTCGATGCTTGGTGCATGCCGAATGCACTTAGATTTGAATATGGCCCAACAAGTAATGAAGGAGATTGGTGCACAAAGTTTGGACTCTGTTTCTGGCAATAGTTCTTACAATGTGCTTATGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGAGTGAGGATGGCCATGATAAATGGAGGTTCTAAAAAGACACCTGGTTCAAGTTGCCTTGCATTATCTATCTATCCTTTTTTCTGGCAGGGTTATCAAGGTGGGGATGAAGTCAACATGCTTCAAAGGCATTTATCTGGGACAGCAATTAAATTTGGCATTGGTGCAAATCGAGCAGCTCTTGCTAGTCATTTCATCCAAAAATATGGATATATTGATAGCCATAAAAGTTCATGGCATGAGGACGTTGGCTCTAATTGGAAGACGCAAGGTTGTTGTGATTCCAAAAAAGCTGGAGTTGTAGTTCTTGATGATGCTATGCAGCATTGGAGCTTGTGGCGAGATATGGAGATTGTAATGGTTAATGGATTAACTCTTTGGGGTAACCTTCAACTAATGCCACTTGGACCATTGAGGGAACCCTTGACGGCACTTAGACGAGCAGATGTTGTTGTTGTACATCATGCAGACTTGGTTTCTGAAGATACTCTCAAGGATATCAGATCAATTGTTCAGGGAGTTAAAGATTCTGTTCCTATGTTCTTTACAAGAATGGATCCATCTTACTTATTTGACGTGGGAATTATCAATTTCAAAATACCTATGACGGTTCTGCACAAAGCTCTTGTATTATGTGTTTCTGCCATTGGTTCTGCAGATTCTTTTGTGAAGCAGATACAAAAGATGGGAGCTGTTTATGCTGATCGAATTGACTTTAGTGATCATCACAAATTTGATGCCGGGGATATTGAGATGATCAGAACCAGACTTGGAGAACTAGAGGGCAAGTTTGGTTCCAAGCCAATTGTTGTAGTGACAGAAAAGGATTATGACAGGGACCGGGAGATCTTTAAGCAATTATATCCGTTTAAAGTTTTCGTTCTCTGTTCTAAATTGAAGGTGGTTCCCTACAATGAAAGCACTGAGGATAGCTTTAAGAAGTTTCTACAGGATCAGCTGAAATTAAAATTCCCTGCTAGTGAGAGAGAAATAAGAGTGTGGACCCCATCTTCCTCTCTCTCAATCTCGTACATATGGTTGATGTCACCCAAAAAGCATACAGGGACCTCATCAAAATGGGAGTTAGATGCAGATGCTTTCTTGCACGAAATTATGAGAATTTTGTTTACGCTTACTGGTTATAGCCTGGAGGAAAACTACAGGCCTTCTAGTCATAAAGAGAGTGGGAAAAAAGGTGTGAGGTAG 2802 0.4086 MEKLRRLVTEIAYAHSHANLPPLQRSLVPFLSAASSLYKLALSLRHYFYKVGFFERHQLPIPVISVGNLTWGGNGKTPMVEFIALWLADCGIQPLIISRALHAESIKAGSDSDVMIGTALIGIYAKCGAVHDSRQLFEAMPEKNVVTWNAMISGYLKNGDTNSASILFYKMPGQTEVTWSQMIDGFARNGEIVTARQFFDNVPLMLKNVGTWTVMVDGYARSGKMEAAREIFEQMPQRNFFVWSCMICGYSKIGNVKEAKAIFGRVPVRNLEIWNSMISGYVHNGFGEEALQTFVNMQAEGFLPDEFTAVSILSACAQLGILNVGKKVHHMIRHKVIKINQFVASGLIDMYAKCGDLINARLVFEEFTERNIFCWNAMISGFAINGKCLEVLEFFGRMENSNIGPDSITFLTVLTACAHGGFVNEALEVISKMQKCGLELSIKHYGCMVDLLGRAGRLKEAYELIKRMPMKPNDTILGSMLGACRMHLDLNMAQQVMKEIGAQSLDSVSGNSSYNVLMSNIYAASEKWEKAERVRMAMINGGSKKTPGSSCLALSIYPFFWQGYQGGDEVNMLQRHLSGTAIKFGIGANRAALASHFIQKYGYIDSHKSSWHEDVGSNWKTQGCCDSKKAGVVVLDDAMQHWSLWRDMEIVMVNGLTLWGNLQLMPLGPLREPLTALRRADVVVVHHADLVSEDTLKDIRSIVQGVKDSVPMFFTRMDPSYLFDVGIINFKIPMTVLHKALVLCVSAIGSADSFVKQIQKMGAVYADRIDFSDHHKFDAGDIEMIRTRLGELEGKFGSKPIVVVTEKDYDRDREIFKQLYPFKVFVLCSKLKVVPYNESTEDSFKKFLQDQLKLKFPASEREIRVWTPSSSLSISYIWLMSPKKHTGTSSKWELDADAFLHEIMRILFTLTGYSLEENYRPSSHKESGKKGVR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1569 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Dere04g1569 933 Pfam PPR repeat 445 469 IPR002885 -
Dere04g1569 933 Pfam PPR repeat 242 266 IPR002885 -
Dere04g1569 933 Pfam PPR repeat 211 240 IPR002885 -
Dere04g1569 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Dere04g1569 933 SUPERFAMILY TPR-like 124 266 IPR011990 GO:0005515
Dere04g1569 933 Pfam Tetraacyldisaccharide-1-P 4'-kinase 29 103 IPR003758 GO:0005524|GO:0009029|GO:0009245
Dere04g1569 933 Pfam Tetraacyldisaccharide-1-P 4'-kinase 565 849 IPR003758 GO:0005524|GO:0009029|GO:0009245
Dere04g1569 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Dere04g1569 933 Gene3D Tetratricopeptide repeat domain 174 238 IPR011990 GO:0005515
Dere04g1569 933 NCBIfam pentatricopeptide repeat 211 240 IPR002885 -
Dere04g1569 933 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Dere04g1569 933 NCBIfam pentatricopeptide repeat 242 265 IPR002885 -
Dere04g1569 933 NCBIfam pentatricopeptide repeat 408 441 IPR002885 -
Dere04g1569 933 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Dere04g1569 933 NCBIfam pentatricopeptide repeat 146 171 IPR002885 -
Dere04g1569 933 Pfam E motif 509 551 IPR046848 -
Dere04g1569 933 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 173 IPR046960 GO:0003723|GO:0009451
Dere04g1569 933 Pfam PPR repeat family 143 188 IPR002885 -
Dere04g1569 933 Pfam PPR repeat family 371 418 IPR002885 -
Dere04g1569 933 Pfam PPR repeat family 271 317 IPR002885 -
Dere04g1569 933 FunFam Pentatricopeptide repeat-containing protein 237 335 - -
Dere04g1569 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 174 IPR002885 -
Dere04g1569 933 Gene3D Tetratricopeptide repeat domain 93 173 IPR011990 GO:0005515
Dere04g1569 933 Gene3D Tetratricopeptide repeat domain 239 344 IPR011990 GO:0005515
Dere04g1569 933 Gene3D Tetratricopeptide repeat domain 345 555 IPR011990 GO:0005515
Dere04g1569 933 FunFam Pentatricopeptide repeat-containing protein 344 555 - -
Dere04g1569 933 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1569 Dere-ChrDere04 17383875 17392131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1569 92 550 Glycoside Hydrolase AT3G49170 28.481 1.68e-56 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1569 04 17383875 17392131 Dere04g1569 04 17383875 17392131 ECH