Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1286 ATGGCGACTCCCATCTCTTCCACCTTTCACGCCTCTTTTCTTATGCCATCATCACCATCCTCTTCTTCGTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTACTTCCACTATCTGTCTGCCCAGTTCATCACCTCACTTTTTGAAGCAATCGATAAAGTCCAGAACTTTCTTTAGCCCATCTGAAATGCTCAGATACAATGCTACTGCACCGAGAACCAAAAGAAACCATGGAAGTTCACTCCTTGTTCGTATGTCCTGGGACGGACCACTCTCTTCCGTCAAATTGATCACGCAAGCAAAAAATGTAGAGTTAACGGATAAGGTAAAGCAGCATGTGGAGGAGAAGGTAGGGAAGGCAGTTCAGAACCATAGTCACTTGCTTAGGGAGGTGGATGTGAGGTTATCCATCCGAGGAGGAGGAGAATTTGGGAGAGGACCCATGACCAAAAGATGTGAGGTAACTTTGTTTACAAAGAGGCATGGAGTGGTGAGAGCTGAAGAAGAAGCAGAGACTCTATATGGGAGTATAGATTTGGTATCCTCAATCATTCAGAGAAAGCTGAGAAAGATAAAGGAAAAGGAGTCAGATCATGGTCGCCATATGAAAGGATTCAATAGGTTGAAGTTCAAGGAGCCTGTAACTCAGCTACCCTACGATGACATACAGACACAAACGCAGACAGACACACCTCCCCAGCAAGAGGAACAACTCATGGATGAGATTGTCCGCACAAAGTATTTTGACATGCCCCCACTGACAATAAATGAAGCAATTGAGGAGCTCGAAAATGTTGATCATGACTTCTATGGTTTTCGAAATGAAGAAACTGGGGAGATAAATATCGTATACAGAAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAGAAGGTAAAGCTGAGAAATTGGAACCTGTGGTGGTTGAACCAGCAAGAGAACCCTCCTTCACAGAATGA 960 0.4385 MATPISSTFHASFLMPSSPSSSSSSSSSSSSSSTSTICLPSSSPHFLKQSIKSRTFFSPSEMLRYNATAPRTKRNHGSSLLVRMSWDGPLSSVKLITQAKNVELTDKVKQHVEEKVGKAVQNHSHLLREVDVRLSIRGGGEFGRGPMTKRCEVTLFTKRHGVVRAEEEAETLYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKFKEPVTQLPYDDIQTQTQTDTPPQQEEQLMDEIVRTKYFDMPPLTINEAIEELENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKGEGKAEKLEPVVVEPAREPSFTE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1286 319 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 97 193 IPR003489 GO:0044238
Dere04g1286 319 Hamap Ribosome hibernation promoting factor [hpf]. 93 296 IPR034694 -
Dere04g1286 319 Gene3D - 251 301 IPR038416 -
Dere04g1286 319 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 95 200 IPR036567 -
Dere04g1286 319 MobiDBLite consensus disorder prediction 14 34 - -
Dere04g1286 319 FunFam ribosome-binding factor PSRP1, chloroplastic 251 302 - -
Dere04g1286 319 Gene3D - 94 205 IPR036567 -
Dere04g1286 319 PANTHER 30S RIBOSOMAL PROTEIN 79 305 - -
Dere04g1286 319 NCBIfam ribosome-associated translation inhibitor RaiA 95 198 IPR003489 GO:0044238
Dere04g1286 319 CDD RaiA 94 193 IPR003489 GO:0044238
Dere04g1286 319 FunFam Ribosome-binding factor PSRP1, chloroplastic 95 198 - -
Dere04g1286 319 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 239 292 IPR032528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1286 Dere-ChrDere04 14628460 14630245 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1286 04 14628460 14630245 Dere04g1286 04 14628460 14630245 ECH