Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere04g1233 | ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGATTATGACTCAGAGACCTTGGCTAGAACCAGACCTCGGTATAATCACCACTACACGAGTAGTACCCACCGTCATCGCGGTGGCGGCAGTGGTGGTCGACCTTCTAAGGCCCAAGACTCATCCTTAACGGTGAGCACAAATTACCGCATTTTGTGCCACGATATGAAGGCTGGTGGAGTAATTGGCAAGTCAGGTAGTATTATAAAGTCTATTAGGCAACACACCGGCGCGTTGATCAACGTGCACGAGCTGATCCCTGGCGATGAGGAGCGAATCGTTGAGATTTCTGACACGCGCCGGCGAGACCCAGAAGGCCGAATGCCGTCGTTCTCACCGGCGCAGGAGGCCCTGTTGTTGATTCATGAGAGGATTCTTGAGAGCGATGCCGCGTTTGGGATTGGCGAGGAGGAGGAGGAGTATGGGGGCAGAGGAGGTGGGAGCAGCAGCCGAGTCGCTACTAGACTGGTGGTGTCCAGAATGCATGTGGGGTGTTTATTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGGAATGAAACCAAGACACAGATTAGAATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCTATGTCGGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTACTTATATCATCACGTTTAAGAGAAAGCCAGCATCGTGACCGCAGTCATTTTCATGGAAGAGCACATTCACCAGAGCGTTTTTTCCCTTCAGATGATGACTATATACCTCATGGGGCAGCTCGTAGATCATCTATGGATGGGGCATATTTTGGATCAAGATCATCTACTGCTAGTATAAGAAGCAATAGCTACTCATCATTAGGTTATGCAATGGAACTGGGGCCTCTTCCTGGGGCTGATGATGCACGGCCCCTTTATGGCGAGGACCTTATTTTCCGGATACTTTGTCCACTGGACAAAGTGGACTGTGTTATTGGGGAATCAGATGGATTCGTAGAGTTCCTTCAAAATGAAGTTGGCGTAGACGTTAAGGTCAATGATCCTGTGGCTGGTTCAGATGAACAGATAATCATCATTTCTTCAGATGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAAGTCAAATTGTTGATCTTGAGCTAGATAAGGACATTATAACCACCAGGCTTGTTATTCCATCTAGTGATATTGTATGTTTAGATGGAAGAGATGCATCACTATTGGAGATAAGGAGACTCACTGGTGCTAATATTCAAATTCTTCCGAGAGAGGAATTACCTCTCTGTGTTGCAAGAACTGATGAGCTGGTACAGATTGTAGGTGAGATCCAAGCAGCCAGAGAAGCTGTTGTTGAGGTGACTTCAAGACTAAGAAATTATTTGTACAGGGATTTCTTTCAAAGGGACACATTAGTGGCTTCTGCCCCTGTACCTAATATGGATACATCTTCCAGTAATATAACTCCAGTTAATGACGGTTATACTGCCACTGAAACTCCCACAACCTATCAGAATTTGCAACCTGTGGCAGCTGCCCTTCCATTAAAAGAAACTGGAGGATCTAGCATTGAGACAGGAAAGCAGAAAGAAGGTGATCGCTGTGATGATTTGACGAGTACTTTGAATAGGATCCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTCGTCATACCGGACTATGCAGTTCCAAAGCTTACAGCAAAATCCAAAAACAAGCTTGCACAGATAAGTGAGTTGTCAGGAGCCAATGTAACCCTTGTAGAGGATAGACCGGAGGAAAAACAGAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCCGAGCGAGCTCAGAGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAAGATGGCCCTTAA | 1941 | 0.456 | MERSRSKRNYYYDQDYDSETLARTRPRYNHHYTSSTHRHRGGGSGGRPSKAQDSSLTVSTNYRILCHDMKAGGVIGKSGSIIKSIRQHTGALINVHELIPGDEERIVEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEEYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRNETKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERFFPSDDDYIPHGAARRSSMDGAYFGSRSSTASIRSNSYSSLGYAMELGPLPGADDARPLYGEDLIFRILCPLDKVDCVIGESDGFVEFLQNEVGVDVKVNDPVAGSDEQIIIISSDEGPDDELFPAQEALLHIQSQIVDLELDKDIITTRLVIPSSDIVCLDGRDASLLEIRRLTGANIQILPREELPLCVARTDELVQIVGEIQAAREAVVEVTSRLRNYLYRDFFQRDTLVASAPVPNMDTSSSNITPVNDGYTATETPTTYQNLQPVAAALPLKETGGSSIETGKQKEGDRCDDLTSTLNRIPVPLVTRSTLEVVIPDYAVPKLTAKSKNKLAQISELSGANVTLVEDRPEEKQKIIRISGTPEQAERAQSLLQGFILSTQEDGP | 646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere04g1233 | 646 | ProSiteProfiles | Type-1 KH domain profile. | 59 | 131 | - | - | |
| Dere04g1233 | 646 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 60 | 110 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | ProSiteProfiles | Type-1 KH domain profile. | 570 | 634 | - | - | |
| Dere04g1233 | 646 | SMART | kh_6 | 163 | 239 | IPR004087 | GO:0003676 | |
| Dere04g1233 | 646 | SMART | kh_6 | 58 | 139 | IPR004087 | GO:0003676 | |
| Dere04g1233 | 646 | SMART | kh_6 | 403 | 477 | IPR004087 | GO:0003676 | |
| Dere04g1233 | 646 | SMART | kh_6 | 320 | 396 | IPR004087 | GO:0003676 | |
| Dere04g1233 | 646 | SMART | kh_6 | 569 | 639 | IPR004087 | GO:0003676 | |
| Dere04g1233 | 646 | Pfam | KH domain | 167 | 235 | IPR004088 | GO:0003723 | |
| Dere04g1233 | 646 | Pfam | KH domain | 572 | 635 | IPR004088 | GO:0003723 | |
| Dere04g1233 | 646 | Pfam | KH domain | 62 | 110 | IPR004088 | GO:0003723 | |
| Dere04g1233 | 646 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 52 | 259 | - | - | |
| Dere04g1233 | 646 | Gene3D | K Homology domain, type 1 | 161 | 243 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | CDD | KH-I_PEPPER_rpt1_like | 321 | 389 | - | - | |
| Dere04g1233 | 646 | Gene3D | K Homology domain, type 1 | 569 | 641 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | Gene3D | - | 321 | 480 | - | - | |
| Dere04g1233 | 646 | ProSiteProfiles | Type-1 KH domain profile. | 321 | 388 | - | - | |
| Dere04g1233 | 646 | CDD | KH-I_PEPPER_rpt2_like | 406 | 477 | - | - | |
| Dere04g1233 | 646 | ProSiteProfiles | Type-1 KH domain profile. | 164 | 234 | - | - | |
| Dere04g1233 | 646 | CDD | KH-I_PEPPER_rpt2_like | 167 | 239 | - | - | |
| Dere04g1233 | 646 | CDD | KH-I_PEPPER_rpt1_like | 62 | 132 | - | - | |
| Dere04g1233 | 646 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 162 | 245 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 570 | 642 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | MobiDBLite | consensus disorder prediction | 21 | 55 | - | - | |
| Dere04g1233 | 646 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 403 | 485 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | Gene3D | K Homology domain, type 1 | 58 | 141 | IPR036612 | GO:0003723 | |
| Dere04g1233 | 646 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 316 | 377 | IPR036612 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere04g1233 | Dere-ChrDere04 | 13819576 | 13824901 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere04g1233 | 04 | 13819576 | 13824901 | Dere04g1233 | 04 | 13819576 | 13824901 | ECH |