Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1164 ATGGTGCTGATATCGGCTGTACGGGATTATATCAACCGGATGTTGCTGGACATTTCTGGCATGAAGGTTCTCATATTAGATTCTCAGACAGTAAGTATTGTGAGTGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTATTTTTGGTAGAGCTAGTGGATTCCATTTCTAAGTCAAAAGAATCAATGTCACATCTCAAGGCTGTTTACTTCCTTCGACCTACTTCAGAGAACATCCAGCATATGCGACGCCAGATAGCCAATCCTAGATTTGGAGAATATCATCTTTTTTTCTCCAACATGTTGAAGGACACTCAGATTCATATACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTTTATGCAGACTTTGTTGCACTTGATCCTTACCATTTTACCTTGAATATACCTTCAAACTACATATATATGCTTCCAGCAATGGTGGATCCTTCAACATTGCAGCACTTCTGTGATCGAGTAGTTGACAGTATTGCAGCTGTTTTTTTGGCATTAAAACGAAGACCGGTAATTAGATATCAAAGAACATCTGACATTGCAAAAAGGATAGCACAGGAAGCAGCTAAAATAATGTACCAACAGGAAAGTGGTCTTTTTGATTTTAGGCGAACAGAAGTTTCTCCATTATTCTTGGTGATTGACAGGCGTGATGATCCTGTAACACCATTGCTAAATCAATGGACCTATCAGGCGATGGTTCATGAACTTATAGGAATCCAAGACAACAAAGTAGACTTAAAATCCCTTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCTGAACAAGATTCTTTCTTTAAAGCTAACATGTATGAGAACTTTGGAGATATAGGTATGAATATCAAGCGATTGGTGGATGAATTTCAGCAAGTGGCTAAGAGTAACCAGAACATCCAAACAATAGAGGACATGGCTAAATTTGTTGACAACTACCCTGAGTACAGAAAAATGCATGGAAATGTGTCAAAACATCTAACCTTGGTAACGGAAATGAGCAAGATAGTTCAAGAGAGAAAGCTTATGTTAGTCTCAGAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGGGCTGCTTTTGAGGCAGTGACAAATCTATTAAACAATGAAAACATATCAGATGAGGACCGGCTACGTTTAGTCATGTTATATGCTTTGCGATATGAGAAGGATAGCCCTGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCCGATCAGCCAAGTACAAACCTGGGGTTGTCCAGTTTCTTTTGAAGCAAGCAGGTGTTGACAGGAGAACTGGTGATCTTTATGGAAGTAGAGATCTACTGAATATTGCCCGTAACATGGCCCGTGGATTGAAGGGTGTGGAGAATGTATACACTCAGCATCAACCACTTCTGTTCCAAACCATGGAAAGTATTGTGAAAGGGCGATTGAGAGATGTGGACTACCCATTTGTTGGAAATCACTTCCAACAGGGAAGGCCACAGGAAGTTATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCTCGTTGTGTTTCTCTACAAAATACCAGCAATACCGGAATTCGGTTTATACTTTGTGGCTCTGCAGTTCTTAATTCTAAGAGGTTTCTTAGGGATTTGGAAGAAGCTCAGAGGGTAGCTCGTTCTAGCACTGTTCTTTGA 1704 0.4049 MVLISAVRDYINRMLLDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSKESMSHLKAVYFLRPTSENIQHMRRQIANPRFGEYHLFFSNMLKDTQIHILADSDEQEVVQQVQEFYADFVALDPYHFTLNIPSNYIYMLPAMVDPSTLQHFCDRVVDSIAAVFLALKRRPVIRYQRTSDIAKRIAQEAAKIMYQQESGLFDFRRTEVSPLFLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSLGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHLTLVTEMSKIVQERKLMLVSETEQELACNGGQGAAFEAVTNLLNNENISDEDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGVVQFLLKQAGVDRRTGDLYGSRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRCVSLQNTSNTGIRFILCGSAVLNSKRFLRDLEEAQRVARSSTVL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1164 567 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Dere04g1164 567 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Dere04g1164 567 FunFam Vacuolar sorting protein 3 128 - -
Dere04g1164 567 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Dere04g1164 567 Gene3D - 138 555 IPR027482 -
Dere04g1164 567 Gene3D - 353 474 - -
Dere04g1164 567 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 12 554 IPR001619 GO:0016192
Dere04g1164 567 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Dere04g1164 567 Gene3D - 4 128 IPR043154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1164 Dere-ChrDere04 12990506 12996842 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1164 04 12990506 12996842 Dere04g1164 04 12990506 12996842 ECH