Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1154 ATGCGTCATCGAGGAATGGATCCCGATGAGGATGAGTACGAGGAGGAATTCGAAGACGAACACGCCGTCGAAGACGACGAAGCCGAGGTGGAGGAGGAGGAGGAGGATAGAGGAGCCTCCTCCAGGAAGCGGAGAAGATCTGGGTTCATAGACGACGACGCTGAGGAGGTCGACGAGGACGAAGAGGAGGAGGATGATGAAGATGATTTTGATGATAGAGGCGGTCGAAAGCGCCAATACAAGAGAATGGCAGCCTCCAACTTCTTCGATGAAGAGGCGCAGGTGGACAGCGACGAGGAAGAAGAAGAGGAAGAAGCTGAGGACGATTTCATCGTCGATGAAGGAGCTGATCTACCGGATGAAGATGGTGGAAGAAGGATGCATAGCCGTCGTATGCTGCCACATGATCAAGAAGACCATGAAGATCTTGAAGCTATGGCAAGAAGCATTCAGGAAAGATATGGAAGACGTGTCACAGATTATGATGAAGAAGCTACAGATGTAGAGCAACAAGCACTTCTGCCATCTGTGAGAGATCCAAAATTGTGGATGGTGAAATGTGCGATTGGTCGTGAGCGTGAGGCTGCTGTTTGCCTTATGCAAAAGTACATTGATAAAGGCTCTGAATTGCAAATAAGGTCTGCTATTGCTCTTGATCATCTCAAAAACTTCATATATGTTGAAGCAGATAAAGAAGCCCATGTGAGAGAGGCTTGCAAAGGTCTACGCAACATAAATGCCCAGAAAATAACACTTGTTCCAATTAAAGAAATGACTGATGTTCTTTCAGTTGAAAGCAAAGCTATCGATCTTTCCAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTTGCCAAAGTTGTGGATGTGGATAATGTACGGCAGAGGGTTACTGTGAAATTGATTCCAAGGATAGACTTACAGGCCCTTGCAAATAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTTCCTCCTCCTCGGTTTATGAATGTTGATGAGGCTAGGGAACTGCATATCCGAGTAGAGCATAGACGTGATCCCATGACTGGGGAACGCTTCGAAACCATTGGAGGCATGATGTTCAAAGATGGTTTCTTGTACAAAACAGTATCAATAAAGTCGATTAGTGTCCAGAACATCAAACCTACTTTTGATGAACTTGAAAAATTTCGTAAACCGGGTGAGAATGGAGATGGAGATGTAGCTAGTCTGTCAACTTTATTCGCAAACAGGAAAAAAGGGCATTTTATGAAAGGTGATGCTGTTATTGTGATCAAGGGAGATCTGAAGAATTTGAAGGGGTGGGTAGAGAAAGTTGATGAAGACAACGTTCATATCAGACCAGAGATCAAGGGCCTTCCTAAAACTCTTGCAGTAAATGAGAGGGAACTTTGTAAATACTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGTACACAAGAAGGGGCTACTGGTATGGTTGTGAAGGTTGAACAACATGTTCTGATCATTTTATCAGATACAACAAAAGAACATATTCGTGTATTTGCCGATGATGTTGTGGAGAGTTCTGAAGTGACTACAGGAGTGACAAGAATTGGGGACTATGAGCTCCATGATCTTGTTCTGCTCGATAATTTGAGCTTTGGTGTAATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGGTTCCTGACAGACCTGAAGTTGCGCTGGTGAAATTAAGGGAAATCAAGTGCAAGATCGATAAAAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCAACAAAGGATGTTGTGCGGATAGTTGAGGGTCCCTGCAAAGGCAAACAAGGACCAGTGGAGCACATATATAGAGGAGTCTTGTTCATATATGATCGACATCATCTTGAACATGCTGGCTTTATATGTTCTAAGGCTCAATCATGTGTGGTTGTGGGAGGTTCAAGATCCAATGGTGACAGAAATGGTGATGCCTACTCAAGATTTCCCAACCTCAGAACTCCACCTCGAATCCCGCAGTCTCCAAGGAGGTTTTCTCGAGGAGGGCCACCAATGGATTCTGGAGGAAGGCATAGGGGTGGAAGAGGCCATGATGGATTGGCTGGTGCAACAGTTAAAATACGCCAAGGTCCCTATAAAGGTTACCGTGGGCGTGTTATAGAAGTTAAGGGCACATCAGTTCGGGTTGAACTGGAGTCCCAAATGAAGGTTGTGACAGTTGATCGTAACCATATATCTGATAATGTGGCCATAACAACCCCGTATCGTGACTCTTCTCGATATGGAATGGGAAGTGAGACCCCAATGCATCCTTCTCGAACTCCATTACATCCATATATGACTCCTATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGAACACCTATGCGGGACCGAGCATGGAATCCATACACTCCCATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTACCAGTCCACAGTACCAGCCAGGGAGTCCTCCTTCACGGCCATATGAAGCTCCAACTCCTGGTGCTGTTTGGGCTAGCACACCCGGTGGTAATTTTAGTGAAGCTGGGACACCCAGGGACAACTCGGCATATGCCAATGCTCCTAGCCCATATTTACCATCTACACCTGGTGGACAGCCTCTGACACCAAATTCAGCATCTTATCTTCCTGGCACTCCTGGAGGACAGCCTATGACGCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTGATAGGTGGAGAGAGTGAAGGACCATGGTTTATGCCAGAGATATTGGTCAATATACGCCGGTCCGGAGACGAATCTGTTGTGGGAGTTATAAGAGAGGTGCTTCCGGACGGGTCTTGCAGGGTAGTCCTGGGATCAAGTGGGAATGGGGAAACAATAACAGCCCTTCCCAGCGAAATGGAGGCTGTAGTTCCAAGGAAATCAGACAAGATAAAGATCATGGGCGGGGCCTTGCGTGGTGCTACAGGCAAGTTGATTGGGGTAGATGGCACTGATGGCATTGTAAAGGTAGATGACACGCTGGATGTGAAGATTTTAGACTTAGTCATTCTGGCTAAATTAGCTCAATCATGA 3120 0.4577 MRHRGMDPDEDEYEEEFEDEHAVEDDEAEVEEEEEDRGASSRKRRRSGFIDDDAEEVDEDEEEEDDEDDFDDRGGRKRQYKRMAASNFFDEEAQVDSDEEEEEEEAEDDFIVDEGADLPDEDGGRRMHSRRMLPHDQEDHEDLEAMARSIQERYGRRVTDYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKYIDKGSELQIRSAIALDHLKNFIYVEADKEAHVREACKGLRNINAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPMTGERFETIGGMMFKDGFLYKTVSIKSISVQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIDKKISVQDRFKNTVSTKDVVRIVEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICSKAQSCVVVGGSRSNGDRNGDAYSRFPNLRTPPRIPQSPRRFSRGGPPMDSGGRHRGGRGHDGLAGATVKIRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAITTPYRDSSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRPYEAPTPGAVWASTPGGNFSEAGTPRDNSAYANAPSPYLPSTPGGQPLTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGESEGPWFMPEILVNIRRSGDESVVGVIREVLPDGSCRVVLGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1154 1039 MobiDBLite consensus disorder prediction 118 137 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 890 904 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 798 918 - -
Dere04g1154 1039 CDD NGN_Euk 181 263 IPR039385 -
Dere04g1154 1039 Pfam Early transcription elongation factor of RNA pol II, NGN section 181 262 IPR005100 -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 1 137 - -
Dere04g1154 1039 PIRSF Spt5 4 1039 IPR017071 GO:0006357|GO:0032784
Dere04g1154 1039 CDD KOW_Spt5_3 474 524 IPR041976 -
Dere04g1154 1039 Pfam KOW motif 477 504 IPR005824 -
Dere04g1154 1039 Pfam KOW motif 708 737 IPR005824 -
Dere04g1154 1039 Pfam Spt5 transcription elongation factor, acidic N-terminal 88 175 IPR022581 -
Dere04g1154 1039 Gene3D - 689 754 IPR014722 -
Dere04g1154 1039 Gene3D - 161 263 IPR036735 GO:0006355
Dere04g1154 1039 PANTHER SUPPRESSOR OF TY 5 71 1016 IPR039659 GO:0006357|GO:0032784
Dere04g1154 1039 Gene3D - 417 474 IPR014722 -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 862 881 - -
Dere04g1154 1039 SUPERFAMILY Translation proteins SH3-like domain 466 525 IPR008991 -
Dere04g1154 1039 CDD KOW_Spt5_6 980 1037 IPR041980 -
Dere04g1154 1039 SMART nusgn_4 179 265 IPR006645 GO:0140673
Dere04g1154 1039 MobiDBLite consensus disorder prediction 10 34 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 656 707 - -
Dere04g1154 1039 Gene3D - 477 526 IPR014722 -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 762 783 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 92 117 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 35 52 - -
Dere04g1154 1039 FunFam Transcription elongation factor SPT5 691 754 - -
Dere04g1154 1039 CDD KOW_Spt5_5 706 752 IPR041978 -
Dere04g1154 1039 Gene3D - 270 312 IPR014722 -
Dere04g1154 1039 ProSitePatterns Ribosomal protein L24 signature. 426 443 IPR005825 GO:0003735|GO:0005840|GO:0006412
Dere04g1154 1039 CDD KOW_Spt5_2 423 473 IPR041975 -
Dere04g1154 1039 SMART kow_9 598 625 IPR005824 -
Dere04g1154 1039 SMART kow_9 704 731 IPR005824 -
Dere04g1154 1039 SMART kow_9 422 449 IPR005824 -
Dere04g1154 1039 SMART kow_9 270 297 IPR005824 -
Dere04g1154 1039 SMART kow_9 474 501 IPR005824 -
Dere04g1154 1039 SMART kow_9 986 1013 IPR005824 -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 71 85 - -
Dere04g1154 1039 FunFam Transcription elongation factor SPT5 477 526 - -
Dere04g1154 1039 CDD KOW_Spt5_4 602 644 IPR041977 -
Dere04g1154 1039 FunFam Transcription elongation factor SPT5 417 474 - -
Dere04g1154 1039 FunFam Transcription elongation factor SPT5 161 263 - -
Dere04g1154 1039 SUPERFAMILY Translation proteins SH3-like domain 415 453 IPR008991 -
Dere04g1154 1039 CDD KOW_Spt5_1 274 311 IPR041973 -
Dere04g1154 1039 Coils Coil 14 34 - -
Dere04g1154 1039 FunFam Transcription elongation factor SPT5 270 312 - -
Dere04g1154 1039 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1154 Dere-ChrDere04 12873971 12883515 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1154 04 12873971 12883515 Dere04g1154 04 12873971 12883515 ECH