Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1075 ATGACCACTGTGCCTGCACTCTCAAATTCGTATTTCTTTGCTATAAAACCTCTTCAGGGAACAACTCCATTTAACACCAATGTCACCTTTATTGTCCCATCTTCGTCTGCTCCCTCCCGGTGTCGGCTGCGACGACGTTTTAGCAAGTGCTCACCCGTTGTTGCGTCTGTCAAGGAGAATATGGTTCGTATTAAAAAAACTATCGACGATTTCACGAGCATGAACTACTGGGTTGTACGTGACTACTATCGCCTGGTGGACTCTGTCAGTGCCTTCGAGCCTCAGATTCAGATACTCTCTGATGAGCAGTTGACTGCAAAAACCCAGGAGTTTCGCCACCGACTCGAGAGAGGGGATACGCTTGCTGATATTCAAGCTGAGGCATTTGCTGTGGTTCGTGAAGCTGCAAAACGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGAGGTGCAGTGCTTCATGATGGTTCCATTGCGGAAATGAAAACAGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCATATCTTAATGCACTGACTGGTGAGGGAGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGCGATGCTGAATGGATGGGCCGTGTTCATCGTTTCTTGGGTCTTTCTGTTGGTCTTATTCAGAGGGGAATGACTGCTGAAGAGCGGAGATCCAATTATAGATGTGATATAACTTATACCAACAATTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGGACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGACGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTAGCTGAATTGCTTATACGGGGAATCCATTATAATGTGGAGCTTAAAGATAATTCGGTCGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACGAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTCTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAAGCTGTAGAGGCAAAGGAAGGTTTAAAAATTCAGGCAGATTCAATCGTTGTAGCACAGATAACATATCAGTCATTATTTAAGCTCTATCCAAAGTTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAAATGCCAGTAATCGAAGTGCCCACAAATCTCCCTAACATACGGAAAGATTTACCTATCCAAGCTTTTGCTACTGCTCGTGGTAAATGGGAGCAAGTTCGGCGTGAAGTTGACTATATGTTTACACAAGGTCGTCCAGTCTTAGTTGGGACAACCAGTGTAGAAAATTCTGAACTTTTGTCTGGTCTGCTTAAGGAATGGAATATTCCCCACAATGTCCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAGATTGTTGCACAGGCAGGACGTAAAAATGCCATTACAATTTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGTGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGACAGCTTACTTTCATTTTTGACTCTGGAGGCTTCCAACATTGAACTTGCTGGTGAAGCAATTTCACAGAAGATGCTTCCAAAGATAAAGGTTGGATCATCATCACTGGCTTTACTGGCTAAGACAGCTTTAATGGCTAAATATGTATCCAAAAGCGAGGGGAAAAGCTGGACATATCAGAAAGCTAAATCTTTTATCTCAGAGACTATCGAAATGAGTCAGTCATATAATTTGAATGAGTTGGAAAAGCTTGCAAATGAGGAATCTGAGATGTATCCTCTTGGCGCAACAGTAGCAGTTGCCTATTTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGGTCTGAGGTGAAAAGACTTGGGGGCCTTCATGTGATTGGTACATCGTTGCACGAGTCCCGAAGAATTGATAACCAGCTCCGCGGCAGAGCAGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGTTTGCAGGATGAAATGTTTCAGAAGTTCAATTTTGATACAGAATGGGCTGTGAGACTCATATCAAAGATTACAAACGATGAGGATATGCCAATTGAGGGTGGTGCTATTGTGAAGCAGCTCTTGGCATTGCAAATTAATGCAGAAAAGTACTTCTTCGGCATAAGGAAGAGCCTAGTTGAGTTTGATGAAGTATTAGAGGTGCAACGAAAGCATGTTTATGACCTTAGGCAGCTAATCCTAACAGGAGATGATGAAAGTTGTTCTCAACACATATTTCAGTACATGCAAGCTGTGGTGGATGAGATTGTCTTTGCTAACATTGATCCGCAAAAGCATCCGGGTAGCTGGGATTTGAGCAAGCTCATTAAAGAGTTCATGAAAATTGGTGGAAAGCTGTTGCATGGATCTTTTGCAGGGATCACTAAAGACACTTTGCTGAAATCAGTTGGGAAATTGCATGATGTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAGATTTACCAGCACCTCCAAATGCCTTCCGGGGAATTCGCCGGAAGAGCTCTTCATTAAGACGTTGGCTGGCTATTTGCTCTGATGCTTCAATTGAGGATGGGAATCATCGAACAGTTACTAATCTTCTTCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAATCAGGTTATGACGAGAGACATGTAAGAGAAATTGAGAGAGCAGTTCTTGTGAAGACGCTAGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGTTCAGCGGTTAATGTAAGGAGTTTTGGCCACAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTTAGTGCAACTCGAAGGTTAACTGTGGAATCACTGCTGCAGTATTGGGCATCTCCAATGGAGTCCCAAGAACTATTTGAATTATAA 3165 0.424 MTTVPALSNSYFFAIKPLQGTTPFNTNVTFIVPSSSAPSRCRLRRRFSKCSPVVASVKENMVRIKKTIDDFTSMNYWVVRDYYRLVDSVSAFEPQIQILSDEQLTAKTQEFRHRLERGDTLADIQAEAFAVVREAAKRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMTAEERRSNYRCDITYTNNSELGFDYLRDNLAGSSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSIVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVDYMFTQGRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTLEASNIELAGEAISQKMLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFISETIEMSQSYNLNELEKLANEESEMYPLGATVAVAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGGAIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFANIDPQKHPGSWDLSKLIKEFMKIGGKLLHGSFAGITKDTLLKSVGKLHDVGSIDIVNFSLPDLPAPPNAFRGIRRKSSSLRRWLAICSDASIEDGNHRTVTNLLRKYLGDFLIASYLNVVEESGYDERHVREIERAVLVKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFEL 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1075 1054 FunFam Protein translocase subunit SecA 82 303 - -
Dere04g1075 1054 SUPERFAMILY Helical scaffold and wing domains of SecA 943 1051 IPR036266 -
Dere04g1075 1054 SMART SecA_PP_bind_2 292 403 IPR011130 GO:0016020|GO:0017038
Dere04g1075 1054 PRINTS SecA protein signature 458 471 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 178 188 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 231 251 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 421 438 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 384 406 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 162 176 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 PRINTS SecA protein signature 124 148 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 FunFam Protein translocase subunit SecA 912 1041 - -
Dere04g1075 1054 Pfam SecA DEAD-like domain 75 446 IPR011115 GO:0005524|GO:0016020|GO:0017038
Dere04g1075 1054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 313 IPR014001 -
Dere04g1075 1054 Gene3D - 83 460 IPR027417 -
Dere04g1075 1054 ProSitePatterns SecA family signature. 547 562 IPR020937 GO:0006605|GO:0006886|GO:0016020
Dere04g1075 1054 NCBIfam preprotein translocase subunit SecA 89 861 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 Hamap Protein translocase subunit SecA [secA]. 63 1044 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 ProSiteProfiles SecA family profile. 64 768 IPR014018 -
Dere04g1075 1054 FunFam Protein translocase subunit SecA 771 890 - -
Dere04g1075 1054 CDD SF2_C_secA 465 736 IPR044722 -
Dere04g1075 1054 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 38 1051 IPR000185 GO:0005524|GO:0006605|GO:0006886
Dere04g1075 1054 CDD SF2_C 654 727 - -
Dere04g1075 1054 Pfam SecA preprotein cross-linking domain 299 403 IPR011130 GO:0016020|GO:0017038
Dere04g1075 1054 SUPERFAMILY Helical scaffold and wing domains of SecA 772 869 IPR036266 -
Dere04g1075 1054 Gene3D Helical scaffold and wing domains of SecA 911 1044 - -
Dere04g1075 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 460 IPR027417 -
Dere04g1075 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 749 IPR027417 -
Dere04g1075 1054 Gene3D - 293 413 - -
Dere04g1075 1054 SMART SecA_DEAD_2 64 447 IPR011115 GO:0005524|GO:0016020|GO:0017038
Dere04g1075 1054 Pfam SecA Wing and Scaffold domain 766 1041 IPR011116 GO:0016020|GO:0017038
Dere04g1075 1054 SUPERFAMILY Pre-protein crosslinking domain of SecA 291 412 IPR036670 GO:0016020|GO:0017038
Dere04g1075 1054 CDD DEXDc_SecA 103 459 - -
Dere04g1075 1054 Gene3D - 462 768 IPR027417 -
Dere04g1075 1054 Gene3D Helical scaffold and wing domains of SecA 771 879 - -
Dere04g1075 1054 FunFam Preprotein translocase SecA subunit 293 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1075 Dere-ChrDere04 11531797 11543132 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1075 04 11531797 11543132 Dere04g1075 04 11531797 11543132 ECH