Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1073 ATGGAGTTACCGGAGTGCCCGGTGTGCCTTCAAACCTACAACGACGGAAGCACAATTCCCAGGGTACTTGCCTGTGGCCACTCGATATGTGAAGCCTGCCTTGTTGAACTCCCAGAGCGATACCCCACCACCATTCGCTGCCCTTCTTGTACCCAACTTGTCAAATACTCTAGTCAGCAAGGCCCCTCTGCCCTTCCCAAGAACATCGACCTTCTCAGAGTCTGTCTCGAACGCCCATCTTTTTCTTCTGATCACTCCCAGAATCCGAAACAGCAAACCGCAAAGAATGGTGATGATCACTCTAAATTTTGTGCTCGCTTCTGGTCGGACGAGTTGTATGCCACCTGGAAGGATTGGATTCTTCTGCACGACGTGGTTTCGATTGAGTCCGAACCCGCCGGCCGCGAAGGTCCTGGCCTTGGCCTTGTCCTACGAGGGCGATTCAATTCAACTCGTTCGTTGAAAGGTAGGGTTTGTATACAAGAAAACCAGAGCCTGAGCCTTGCTCCGATTGCCTCTTTACCGCCTGTCGATCATTCTAAGTTCAGGTTTAGTTATGTGGCCCGAATTATGATGTGTTTGGAGGGAATGAAAGAGGTTCAGAGGGAAGAATTAGCTTTGATTCTCAAAGTTTCCGTGAAACAGAATAGGATATGTAAATTTTATGGCTTGTGGAGCGACTTAGTTGACGGGCATCTATATTTAGTGTGTGAGAGACGCAATGGTAGTTTTCCTGAGAAGTTTAGTGAGTTGAGAAATAGGTTTGGGTTTGTCGGTCTCACTGGAGATGCTTTGAATAGAGATGGGTTTGTTAGCTTTGCAGTGAGAGGTATAAGTATTTGTGAAGCCTTGATTGCTTTGCATACAGAAGGTTTGGTTGCCGGCTATTTTGAACTTTCTTGCTTCTGTTTTGATGAGCTTGGTGGCATTTATTTTAATTTAAATGAAACATTAGCAAGGGGAAGGGAGATTCGTTGTGCTCTGATGGATGCTATTTCTAGTGGCACCAGTAATTCAGATAAACAAGAAGCAATTTTGGACTATGTCTTCAAAAATGAGGTTTTCATAAGCCCAGAGGGCTTGTTTGAGTTACTGCAGGTGGAGACTACTACTCTAGAGAGTGGGCATACTAGACACCCCATTGGGTATGGCTCTGATGTATGGTCCTTGGCTTGCGTACTGCTGCGACTTCTTTTTGGAAATGCACTCCCTCGGTATACCTTGGAAATGAATGAAGAGATGAAAGGTTTTGACTTTTCAGCTGGTTACACTTGTTGGGTGGAGAGAGTTAGTTCCTTTTTGGAAGATAAATTGGGCTCAGAATATTTGTTGTTCAGGCAGACTCTTCGCAAATGTTTGGAAATAAATCCAGGAAGTCGCCCAGATGTGGCAGGTGTAAGGAAATGCATTTGGGATATGCTAATTAAACCACAATTTGATGTTCTAGGCACCTCAGAGGTTGCAATAAATATAAACAGCGTATACTGCTGCTTGATCCTGGGGGACTTGTGTCAGTTGCCCCAGGAATGCTCAAAAGCTCAGAGAGCATGTGAGTTGCAGGACAAAGATGGTGGTCTATTAGACTTTGTTCAGGATGGGGAGGAGAAATCTGATGAAGATTTTGTTGAGGGCCTATCTAAGGGAACGACTGAACTTAAAGATCTGCGAGGCCATCTTGATTGTATCACTGGATTAGCTGTAGGAGGGGGATTTCTGTTTAGCTCCTCATTTGATAAGTCCATCCGAGTATGGTCATTGCAGGACTTTTCTCATGTACACACCTTTAGAGGTCATGAGAGTAAAGTCATGGCTGTGGTTTATGTGGATGAAGTAGAACCATTGTGCATAAGTGGTGACAATGGAGGGGGTATATTTATCTGGGGAATAACTTCGCCTCTCAGGCAAGATCCATTGAGGAAGTGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTCTCTGATTGTTTCAAGCAATCTTTGCCTCTACACTGGAAGTGGGGATAGATCAATAAAAGCTTGGTCGTTGAAGGATGGAACTTTGATATGCACAATGAATGGTCATAGATCTGTAGTTTCCACACTTGCAATATGTGATGAGGTTCTCTACAGTGGTAGTTGGGATGGAACCATTAGGTTGTGGAGTCTTATTGATCATAGCCTGTTGACTGTGCTTGGGGAAGATATGCCTGGAGAGATGAAATCTGTCCTTTCTATTACTGCGGATAGACATTTGCTTGTTGCAGCTCATGAGAATGGATGCATAAAGGTCTGGAGAAACGACATCTTCATGAACTCCAAAGCATTGCATAGTGGTGCCATTTTTGCTATTAGTATTCAGGGGAATTGCCTCTATACAGGAGGTTGGGACAAACAAGTAAATATACAGGAATTGTCAGGAGATGAGTTTCAACTGGTTGTCAATTCCGTTGGATATATTCCATGCATTTCTGTTGTAACAGCTATATTATGCTGGCAAGGAAAACTATTTGTTGGATTTGCTGATAAGTCTATCAAGGTTTATCACGGGAGTCGGTAG 2541 0.44 MELPECPVCLQTYNDGSTIPRVLACGHSICEACLVELPERYPTTIRCPSCTQLVKYSSQQGPSALPKNIDLLRVCLERPSFSSDHSQNPKQQTAKNGDDHSKFCARFWSDELYATWKDWILLHDVVSIESEPAGREGPGLGLVLRGRFNSTRSLKGRVCIQENQSLSLAPIASLPPVDHSKFRFSYVARIMMCLEGMKEVQREELALILKVSVKQNRICKFYGLWSDLVDGHLYLVCERRNGSFPEKFSELRNRFGFVGLTGDALNRDGFVSFAVRGISICEALIALHTEGLVAGYFELSCFCFDELGGIYFNLNETLARGREIRCALMDAISSGTSNSDKQEAILDYVFKNEVFISPEGLFELLQVETTTLESGHTRHPIGYGSDVWSLACVLLRLLFGNALPRYTLEMNEEMKGFDFSAGYTCWVERVSSFLEDKLGSEYLLFRQTLRKCLEINPGSRPDVAGVRKCIWDMLIKPQFDVLGTSEVAININSVYCCLILGDLCQLPQECSKAQRACELQDKDGGLLDFVQDGEEKSDEDFVEGLSKGTTELKDLRGHLDCITGLAVGGGFLFSSSFDKSIRVWSLQDFSHVHTFRGHESKVMAVVYVDEVEPLCISGDNGGGIFIWGITSPLRQDPLRKWYEQKDWRFSGIHSLIVSSNLCLYTGSGDRSIKAWSLKDGTLICTMNGHRSVVSTLAICDEVLYSGSWDGTIRLWSLIDHSLLTVLGEDMPGEMKSVLSITADRHLLVAAHENGCIKVWRNDIFMNSKALHSGAIFAISIQGNCLYTGGWDKQVNIQELSGDEFQLVVNSVGYIPCISVVTAILCWQGKLFVGFADKSIKVYHGSR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1073 846 CDD RING-HC_TRIM32_C-VII 4 53 - -
Dere04g1073 846 ProSiteProfiles Trp-Asp (WD) repeats profile. 555 594 IPR001680 GO:0005515
Dere04g1073 846 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 717 - -
Dere04g1073 846 ProSiteProfiles Protein kinase domain profile. 137 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1073 846 PANTHER - 1 842 IPR044715 -
Dere04g1073 846 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 725 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 719 760 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 634 676 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 761 798 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 548 585 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 679 716 IPR001680 GO:0005515
Dere04g1073 846 SMART WD40_4 588 628 IPR001680 GO:0005515
Dere04g1073 846 Pfam RING-type zinc-finger 6 48 IPR027370 -
Dere04g1073 846 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Dere04g1073 846 SUPERFAMILY Protein kinase-like (PK-like) 198 478 IPR011009 -
Dere04g1073 846 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Dere04g1073 846 SMART ring_2 6 50 IPR001841 -
Dere04g1073 846 Gene3D Transferase(Phosphotransferase) domain 1 198 473 - -
Dere04g1073 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Dere04g1073 846 SUPERFAMILY WD40 repeat-like 551 842 IPR036322 GO:0005515
Dere04g1073 846 Gene3D - 638 846 IPR015943 GO:0005515
Dere04g1073 846 Gene3D - 529 637 IPR015943 GO:0005515
Dere04g1073 846 Pfam WD domain, G-beta repeat 682 716 IPR001680 GO:0005515
Dere04g1073 846 Pfam WD domain, G-beta repeat 552 585 IPR001680 GO:0005515
Dere04g1073 846 PRINTS G protein beta WD-40 repeat signature 572 586 IPR020472 -
Dere04g1073 846 PRINTS G protein beta WD-40 repeat signature 663 677 IPR020472 -
Dere04g1073 846 PRINTS G protein beta WD-40 repeat signature 703 717 IPR020472 -
Dere04g1073 846 SUPERFAMILY RING/U-box 5 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1073 554 822 Acyl Lipid Metabolism Gene Families AT3G18860 21.402 4.24e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1073 04 11522694 11527379 Dere04g1073 04 11522694 11527379 ECH