Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0988 ATGCCGTCGCTGATTTTCCACTCTGTGCGGCACCCTGCTTTGACTCTGTCGTTCTACTCTTTACGACCAGTGAGATTTGCAAACGTCGCCAGGTTCTGCAATCTCTCTTCGTTATTGGCGTCTTCAGCTATGGACAGCAACTCACCTAGTTCGCTGGTTTTATGCGGGAAGTCACAGGCGGAAAATGAAATTGCTAAAACTATTAAGAGCAAGAACACTTTGAAGCTTCCTGACAATGGCGAAATTTCGATCAGTTTGCAGTCGGAATTGGATAATAAATCTTTTAAAGAAGACTCCTTTGGAATTGATTTGTTCATGAATTCTCTTTCCACTGATAAGTTTGGCAGGTTTCTCATTTGGTCCCCCCGGTTGTCTTCAACGCATGATGTGGTTTCACACAACTTCTGTGAGCTTCCCATTGGTACGGTTTGTGTTGCTGATGTTCAAACCAAGGGACGAGGCCGGTCAAAGAATGTGTGGGAGTCTCCATTGGGCTGCCTCCTATTTTCTTTCACTCTACAAATGGAGGATGGGCGAGTTGTTCCTTTACTACAATATGTAGTTTCCCTTGCTGTCACGGAGGCAGTAAAGGATATCTGTGAGAAAAGTGGCTTACCCCGTGTTGATATAAAAATTAAGTGGCCAAATGATCTCTACTTAAATGGCCTTAAAGTCGGAGGCATTCTATGCACCTCAACCTATAAATCAAAGAAGTTTAATGTTAGTGCAGGTATAGGCTTGAATGTCAACAATGAGAAGCCAACAACATGCTTAGATACAGTTCTGAGAGGATTGTCTGTGAAAGCTTACAAATTTCGAAGAGAAGACATTCTTGCCGCCTTCTTTGACAAATTTGAGGAATTTTATAATCTATTTGTGAATCAAGGATTTCAAACCCTAGAGCCGCTATATTATAAGACATGGTTGCACAGTGGACAGAGAGTTATCGTGCAGGAAAAGAATGAGGACACAGTCAGTGAACACGTGGTAACCATTCAGGGTTTAACATCCACAGGTTACTTGTTGGCCGCTGGCGATGACAATCAAATGTTTGAGCTCCATCCTGATGGAAATAGCTTTGATTTTTTCAGAGGACTGGTTAGAAGGAAACTTGAGTGA 1119 0.4245 MPSLIFHSVRHPALTLSFYSLRPVRFANVARFCNLSSLLASSAMDSNSPSSLVLCGKSQAENEIAKTIKSKNTLKLPDNGEISISLQSELDNKSFKEDSFGIDLFMNSLSTDKFGRFLIWSPRLSSTHDVVSHNFCELPIGTVCVADVQTKGRGRSKNVWESPLGCLLFSFTLQMEDGRVVPLLQYVVSLAVTEAVKDICEKSGLPRVDIKIKWPNDLYLNGLKVGGILCTSTYKSKKFNVSAGIGLNVNNEKPTTCLDTVLRGLSVKAYKFRREDILAAFFDKFEEFYNLFVNQGFQTLEPLYYKTWLHSGQRVIVQEKNEDTVSEHVVTIQGLTSTGYLLAAGDDNQMFELHPDGNSFDFFRGLVRRKLE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0988 372 PANTHER BIOTIN PROTEIN LIGASE 33 370 - -
Dere04g0988 372 NCBIfam biotin--[acetyl-CoA-carboxylase] ligase 121 345 IPR004408 GO:0004077|GO:0036211
Dere04g0988 372 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 103 293 IPR004143 GO:0036211
Dere04g0988 372 Gene3D Bira Bifunctional Protein; Domain 2 106 306 IPR045864 -
Dere04g0988 372 CDD BPL 117 292 IPR004408 GO:0004077|GO:0036211
Dere04g0988 372 Pfam Biotin protein ligase C terminal domain 310 364 IPR003142 GO:0036211
Dere04g0988 372 SUPERFAMILY Class II aaRS and biotin synthetases 104 308 IPR045864 -
Dere04g0988 372 Pfam Biotin/lipoate A/B protein ligase family 121 248 IPR004143 GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0988 Dere-ChrDere04 10471973 10476874 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0988 04 10471973 10476874 Dere04g0988 04 10471973 10476874 ECH