Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0972 ATGGAAAACGCCGACATTTTCTTGGGCTTGCAGGACTTCCTGGATCGCATGCGACAACCCTCCGCGGCCGATTTGGTCAAAGCAATCAAAAGTTTTATCGTGTCATTTTCAAATAATGCTTCTGATCCAGAGAGGGATAGTGCTGCAGTACAAGAGTTCCTTGCTAACATGGAAGCCGCTTTCAAGGCTCATCCACTTTGGGCTGGCTGCTCAGAGGGGGAGCTGAAGAATGCCGGGGAAGGGCTGGAGAAGTATGTGATGACAAAGTTATTTGCCCGCGTATTTGCTTCCCTACCGGATGATGTAAAACTTGATAACCAACTTTCTGAGAAGATGGCTTTGATTCAACAGTTTATTCAACCAGAAAATTTGGATATCAAGCCAAACTTTCTGAACGAAACATCGTGTTTGCTCGCACAGAAGGAATTACAGAAGATCAACATGTACAAGGCACCCAGAGACAAACTTTTGTGTATCCTGAATTGTTGCAAGGCCATCAATAATGTGCTGATTAATGCTTCTGTTGCTTCAGACAAGAAACCTCCAGGGGCTGATGAATTTCTTCCTGTTCTGATTTATGTTACTATAAAGGCAAACCCTCCGCAACTGCATTCAAATCTACTGTACATAAAACGGTTTAGAGGCCAATCTCGATTGGTTGCCGAAGCAGTATACTTTTTTACCAACATGCTCTCTTCTGAGTCCTTCATTTTGAATATTGATGCTAAAGCCCTCTCAATGGATGAAACTGAGTTTGAGAGAAACATGGAAACTGCACGTGCTTTGCTTTCTGGGTTTTCCACTGATCTGCAAGATCACTCCACTTCAACATATCAAAATTCTGGACCCCTTACCAAATCAGAACCTTTTAAGCACAACAATGAGGACCCTGCATCACAAACTACATCATCTGAAGCAAAGTCTGAAAGCAAAAGAGAATTTTCTGATGATCTGTCATCGATGAACAAAGTTCCATCCCTCTCAGATTTGGAGAACAAAGGTATAAGTATGCTTTTAAAGGAGGATCAGGTGAACGAAGTTTTCAGGGATTATCCATATTTGTTTGCTCGAGTTGGTGACCTAACAGTCAATGATGTGGAAGACCTACTAAATAATTACAAACAGCTTGTTTTCAAGTATGTATGTCTTTCCAAAGGGATTGGTGTTTCTCCTACATTTCCTCTTCCGTCCAACCCACAAAATCTTGTTCAAGACAATGCTAAAACCCCATTAAAGTCGTCAGGTAGTGAACCTGTAGATGTAGATGTGAATGATAGGTCAGAGGAATCTACTTATATTACAAAGGATTGTCCAGAGACGGTTTCACTTTTTGTGGGGAAAAATAATGAATCTGATCTGCCACATTGA 1368 0.4137 MENADIFLGLQDFLDRMRQPSAADLVKAIKSFIVSFSNNASDPERDSAAVQEFLANMEAAFKAHPLWAGCSEGELKNAGEGLEKYVMTKLFARVFASLPDDVKLDNQLSEKMALIQQFIQPENLDIKPNFLNETSCLLAQKELQKINMYKAPRDKLLCILNCCKAINNVLINASVASDKKPPGADEFLPVLIYVTIKANPPQLHSNLLYIKRFRGQSRLVAEAVYFFTNMLSSESFILNIDAKALSMDETEFERNMETARALLSGFSTDLQDHSTSTYQNSGPLTKSEPFKHNNEDPASQTTSSEAKSESKREFSDDLSSMNKVPSLSDLENKGISMLLKEDQVNEVFRDYPYLFARVGDLTVNDVEDLLNNYKQLVFKYVCLSKGIGVSPTFPLPSNPQNLVQDNAKTPLKSSGSEPVDVDVNDRSEESTYITKDCPETVSLFVGKNNESDLPH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0972 455 MobiDBLite consensus disorder prediction 274 305 - -
Dere04g0972 455 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Dere04g0972 455 MobiDBLite consensus disorder prediction 393 413 - -
Dere04g0972 455 MobiDBLite consensus disorder prediction 393 432 - -
Dere04g0972 455 PANTHER RAB GDP/GTP EXCHANGE FACTOR 9 380 IPR045046 GO:0005085|GO:0016192
Dere04g0972 455 SMART vps9_2 138 254 IPR003123 -
Dere04g0972 455 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Dere04g0972 455 Gene3D VPS9 domain 99 265 IPR037191 -
Dere04g0972 455 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Dere04g0972 455 MobiDBLite consensus disorder prediction 274 326 - -
Dere04g0972 455 Gene3D - 17 97 - -
Dere04g0972 455 Pfam Vacuolar sorting protein 9 (VPS9) domain 139 241 IPR003123 -
Dere04g0972 455 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0972 Dere-ChrDere04 10313348 10318118 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0972 04 10313348 10318118 Dere04g0972 04 10313348 10318118 ECH