Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0962 ATGGATTTGTCGGATGTTCAGCCGGGTCTCTCTCTTGGGTTAAACACTCAGATTTCGTCACCGGCCCTGGCAGGCTCTGTTAGTGATAATTTATTTTCCTTTCAGCTGAATTCGAGCTTTCGTAGTTCCTCGAATACAACCCTTTCTGTTCCGTTGCAGTTGCTCGAGGATAAAGACGAGAAGGATCGCGTCGAATTCGGCGAAGAAGAAGAAGAAGGAGTGGAAGATGAAACAATCAACTTTATGGGTCGGCCTGTCTGTGTGAAGAGGCAATTGGAGGTACAGTCGAATTCCTCTTCGAATCCTCCGAAGCGGCTTGCGGTCGATCCGGGGCTTGAGGCAAAGCGCGCTTCAGTGAAGGCTTGGGGGAACCAGCCACTCGAGGTAGCAGACCCCGAGATTCATGAAATAATGGAGAAGGAAAAGCGGAGACAGTTCAAAGGAATTGAATTGATTGCTTCTGAGAATTTTGTGTGCAGAGCTGTCATGGAAGCTCTGGGAAGCCATTTGACGAACAAGTACTCTGAGGGAATGCCTGGAGCCAAATACTACACTGGGAATCAATATATTGATCAGATGGAAATGCTTTGCTGTAAGCGTGCTTTGGTAGCCTTTGATCTTCATCCCAGCAAGTGGGGCGTGAATGTTCAGCCTTACTCATGTACTTCTGCAAACTTTGCCGTGTATACTGGTCTAATGCATCCAGGGGATAGAATTATGGGTATGGATTTGCCGTCCGGTGGGCATCTGAGTCATGGATATTATACTAACAGTGGAAAGAAAATATCTGCAGCATCGATATTCTTTGAAACTCTGCCTTACAAAGTCAATCCTCAAACAGGCTATTTAGACTATGAAAAGCTTGAAGAAAAAGCACTCGATTATCGCCCCAAATTACTTATATGCGGTGGGAGTTCCTATCCTAGAGAATGGGATTATGCAAGGTTTAGGCAGATCGCTGATAAATGTGGGGCTGTTTTGATGTGTGACATGGCTCATATTAGCGGTCTTGTGGCAGCTAAGGAACTTGCTAACCCATTTGATTACTGCGATATTGTTACTTCAACAACCCACAAAAGTCTGCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGAGGTCCAAAACCAAGGAAGCAAAGCTTGGCTCTTAATCATGGAGATGATAGTACTTATGACTTTGAGGAAAAAATAAACTTTGCTTTATATCCATCCTTACAAGGAGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCCTTAAAACAAGTTGCAAGTCCAGAGTATAAAGTATATATGCAACAGGTGAAGAAAAATGCACAGGCGTTAGCATCTGCTTTGCTGAAAAGAAAATGCAGACTGGTAACTGATGGTACTGACAATCATTTGTTGCTCTGGGATCTAACTGCACTCGGCTTAATTGATAGAAATTATGAGAAAGTCTGCGAGGCGTGTGACATTACACTCAACAAATGTGCCATTTATGGTTCTATTTCTCCCGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGTTGCTTAGAAGATGATTTTGAGACCATAGCTGATTTTCTTCTGAAGGCAGCACAGATTACCTGCAATATACAGAGGGAATATGGGAAATCTTGCAAAGATTTCCTCAGAGGTCTTCAGAATAATAAAGATATTGTTGAGCTCAGAAATCACGTTGAGACATTTGCTTCCCAGCTTGCAATGCCAGCATTCGACATTGATTAG 1746 0.4347 MDLSDVQPGLSLGLNTQISSPALAGSVSDNLFSFQLNSSFRSSSNTTLSVPLQLLEDKDEKDRVEFGEEEEEGVEDETINFMGRPVCVKRQLEVQSNSSSNPPKRLAVDPGLEAKRASVKAWGNQPLEVADPEIHEIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQMEMLCCKRALVAFDLHPSKWGVNVQPYSCTSANFAVYTGLMHPGDRIMGMDLPSGGHLSHGYYTNSGKKISAASIFFETLPYKVNPQTGYLDYEKLEEKALDYRPKLLICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKELANPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRKQSLALNHGDDSTYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVASPEYKVYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLIDRNYEKVCEACDITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFETIADFLLKAAQITCNIQREYGKSCKDFLRGLQNNKDIVELRNHVETFASQLAMPAFDID 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0962 581 Gene3D - 156 435 IPR015421 GO:0003824
Dere04g0962 581 FunFam Serine hydroxymethyltransferase 156 374 - -
Dere04g0962 581 CDD SHMT 131 535 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Dere04g0962 581 Hamap Serine hydroxymethyltransferase [glyA]. 126 577 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Dere04g0962 581 Pfam Serine hydroxymethyltransferase 127 527 IPR039429 -
Dere04g0962 581 Gene3D Aspartate Aminotransferase, domain 1 131 576 IPR015422 GO:0003824
Dere04g0962 581 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 119 579 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Dere04g0962 581 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 351 367 IPR019798 GO:0030170
Dere04g0962 581 SUPERFAMILY PLP-dependent transferases 117 579 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0962 Dere-ChrDere04 10218916 10222538 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0962 04 10218916 10222538 Dere04g0962 04 10218916 10222538 ECH