Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0937 ATGGGCCGTTGCAGGCTGATTATCAGGTCTCGGAGTGAAAGTACTCTCCGGAACTCAATGGCGCTGGAATACTTCCCCGCTTTCCGGCATCTCCTACGTCGTGTATACTGCTTCACACAATGTCCTCTCCCACGCTTAGCCATACCCCTACGGTTAAACCCTTCTATTTGTTCGAACTGTATTCTTTCCTCTAAATCTACAAGCCCAACCTCCAAACCTTCCAAACCCCATGCCACTTCTAAAGAGAATTACACGTTCTTTCTGAAGAAAGATGAGCGCTTGGCGGAGCCTGCTGGTGCTGCTCATGAGCTTGCGCATGTTGAAAATACAAGCACAATTGCCGCCATTGTCACATCCTTGGGTGGTCCCCCTGGTGCTGTGGGAATCGTTCGGCTTTCGGGGCCTTCTGCTGTGGCCATTGTTGGTCGTGTATTTCGACCTGCGAGGAAAAGGAGGAGGGCGTGGCAGCCCACTAGCCATGTCGTGGAGTACGGTGTGGTACTCGATTCAGATGGGAATGTGATCGATGAGGTTTTAGCAGTACCCATGTTAACCCCGAGGTCTTACACTCGTGAAGACGTGATTGAGCTTCAATGTCATGGGAGTGAAGTGTGTCTACGCCGTGTGTTGAGAACTTGTTTGGAAGCTGGAGCAAGGCTTGCCGAACCAGGTGAATTTACTCTCCGTGCTTTTCTGAATGGTCGGTTAGACCTATCCCAAGCTGAAAATGTTGGAAGACTAATAACTGCCAAATCTGTGGCTGCTGCTGATGCAGCACTGGCAGGAATTCAGGGTGGTTTCTCTTCTCTTGTCAGGTCACTGAGAATACAGTGCATTGAGCTGCTTACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCTCTAGATTTGAATCTAATCAGGGATAAAATACATACCATGTCACAAGATGTACAGAATGCATTGGAGACAGCCAATTATGACAAGCTCCTTCAATCTGGATTACAGATAGCAATTGTTGGTCGTCCAAATGTTGGTAAGTCAAGCCTTCTTAATGCATGGAGCAAGAGTGAGAGGGCTATAGTTACTGAAATTGCTGGCACCACCCGGGATGTGATCGAAGCAGATGTCAGCATCAATGGTATTCCTATAACCCTTCTTGATACTGCAGGAATTAGGGATACTGATGACATTGTAGAGAAGATTGGCGTAGAGAGATCTGAAGCAGTTGCTGTGGGAGCTGATGTAATTATCATGACTGTCAGCGCTGTTGAAGGGTGGACTTTGGAAGACACCAAACTTCTAGAAAGGATTCAATCTACTAAGATATCAATGGGATCTTCCACCCCTGCAATCCTTGTGGTCAACAAGATAGACTGTACTCCCTTTGCTGAGATTGAATGGATGAAAGTATGCCCTAATTTTTTCAGTAAACATGTATTTACATGTGCTGTCACTGGGGAAGGATTACAAGAGTTGGAGAGGGCAGTGTTGGAGATAGTGGGCCTTAACAGCATTCCTATTGGGGGACGTAAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACGAAGGAAGCTTTTGAAAGACTAAAATCATCGATACAGGAGAAACTACCACTGGATTTTTGGACAATTGATTTGAGAGATGCCGCATTGGCGCTTGGGCAGATCAGTGGAGAAGATATATCGGAGGAGGTTTTATCCAATATATTTGGCAAGTTCTGTATTGGTAAATAG 1734 0.4602 MGRCRLIIRSRSESTLRNSMALEYFPAFRHLLRRVYCFTQCPLPRLAIPLRLNPSICSNCILSSKSTSPTSKPSKPHATSKENYTFFLKKDERLAEPAGAAHELAHVENTSTIAAIVTSLGGPPGAVGIVRLSGPSAVAIVGRVFRPARKRRRAWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLTPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAEPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLIRDKIHTMSQDVQNALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEADVSINGIPITLLDTAGIRDTDDIVEKIGVERSEAVAVGADVIIMTVSAVEGWTLEDTKLLERIQSTKISMGSSTPAILVVNKIDCTPFAEIEWMKVCPNFFSKHVFTCAVTGEGLQELERAVLEIVGLNSIPIGGRKWTVNQRQCEQLVRTKEAFERLKSSIQEKLPLDFWTIDLRDAALALGQISGEDISEEVLSNIFGKFCIGK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0937 577 Hamap tRNA modification GTPase MnmE [mnmE]. 111 577 IPR004520 GO:0003924|GO:0005525|GO:0006400
Dere04g0937 577 FunFam tRNA modification GTPase MnmE 107 235 - -
Dere04g0937 577 CDD trmE 328 498 IPR031168 -
Dere04g0937 577 CDD TrmE_N 111 234 IPR018948 -
Dere04g0937 577 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 330 498 IPR031168 -
Dere04g0937 577 Gene3D Probable tRNA modification gtpase trme; domain 1 98 235 IPR027266 GO:0005515
Dere04g0937 577 PANTHER TRNA MODIFICATION GTPASE GTPBP3 85 577 - -
Dere04g0937 577 Pfam MnmE helical domain 238 574 IPR025867 -
Dere04g0937 577 Pfam 50S ribosome-binding GTPase 332 453 IPR006073 GO:0005525
Dere04g0937 577 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 125 577 IPR004520 GO:0003924|GO:0005525|GO:0006400
Dere04g0937 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 493 IPR027417 -
Dere04g0937 577 FunFam tRNA modification GTPase MnmE 331 505 - -
Dere04g0937 577 NCBIfam small GTP-binding protein domain 331 456 IPR005225 GO:0005525
Dere04g0937 577 Pfam GTP-binding protein TrmE N-terminus 112 235 IPR018948 -
Dere04g0937 577 Gene3D - 331 505 IPR027417 -
Dere04g0937 577 Gene3D tRNA modification GTPase MnmE domain 2 236 577 IPR027368 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0937 Dere-ChrDere04 9833103 9837639 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0937 04 9833103 9837639 Dere04g0937 04 9833103 9837639 ECH