Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0927 ATGCCTTGCCTTACCAATCGTAGGATTATGGAGCAGTTTAATAATGATGATCTTGAGTATGTCGTCGGTGACTATTACGACGTCCCTGATTTTGAAGATGATGATCCTTTCGTTGAAAGTGATCCTCAAAGTAACAGTAATTTTCATTCTCCGGACTCGGACTTTGAAGATGATTTTGAATTGAGTAAATCGAAAACTGATACATCGGCTTTGGAAGCTAGGAATGGGAAAGATATTCAGGGAATTCCATGGGAGAGGCTTAATTATACCAGAGACAAATACCGTGAGACTCGATTGAAGCAATACAAGAACTATGAGAATCTCTCACGCTCTCGGGAGGAACTCGAGAAGGAGTGCCTGGAAGTGCGGAAAGGGAAGACCTTCTATGACTTCCAGTTCAATACAAGGATTGTCAAATCTACAATTGTGCATTTTCAGCTGAGGAATTTGTTATGGGCAACGTCGAAGCATGATGTATACCTTATGCAAAACTACTCTGTGATGCATTGGTCCTCTTTACTCCGAAGGGGTAAAGAAGTACTTAATGTGGCGAAACCAATAGTTCCAACCCTCAAGCGCCCTGGATTTATGGCTCAGCCCATCTCCAGAGTGCAGATAAGCACCATGGCTGTTAAGGAAAATTTAATGGTGGCTGGTGGTTTCCAGGGTGAGCTTATTTGCAAGAAACTGAATCATGCTAGAGTTGTATTCTGCCGTAGAATAACTACTGGTGATAATGCTATAACCAATGCTGTGGATATTTACCGCAATCCGAATGGCTCGTTGAGGGTCATGGCAGCAAATAATGACGCCCAAGTTCGGGTTTTCGATGCTGAGAATTTTGCTCCTCTTGGTTGTTTCAAATATGACTGGTCTGTTAACAGTATTTCCATTAGTCCTGATGGAAAGTTGTTAGGTGTTCTTGGGGATAGTACCGAGTGCTTGATGGCTGATGCTAACACCGGAAAGGTTATTGGTAGCCTAAAAGGGCACCTGGACTATTCTTTTGCCTCTGCTTGGCACCCAGATGGACGAATACTGGCTACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCTGTATTGAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGGTTCACTTCCGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGATTTCGTCCATATTTTTGACTCTCAGTGTGATTATGTAAAAGGACAAGAGATAGATTTATTTGGTGAAATAGCTGGTATTTCCTTTAGCCCGGACACACAAGCTCTATTTGTCGGTATTGCTGACCGCACTTATGGTAGTTTGTTAGAGTTCAACAGGAAACGTTGTAATCAGTATTTAGACTCCTTGTTTTAG 1383 0.4288 MPCLTNRRIMEQFNNDDLEYVVGDYYDVPDFEDDDPFVESDPQSNSNFHSPDSDFEDDFELSKSKTDTSALEARNGKDIQGIPWERLNYTRDKYRETRLKQYKNYENLSRSREELEKECLEVRKGKTFYDFQFNTRIVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIVPTLKRPGFMAQPISRVQISTMAVKENLMVAGGFQGELICKKLNHARVVFCRRITTGDNAITNAVDIYRNPNGSLRVMAANNDAQVRVFDAENFAPLGCFKYDWSVNSISISPDGKLLGVLGDSTECLMADANTGKVIGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSQCDYVKGQEIDLFGEIAGISFSPDTQALFVGIADRTYGSLLEFNRKRCNQYLDSLF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0927 460 Gene3D - 196 454 IPR015943 GO:0005515
Dere04g0927 460 SUPERFAMILY WD40 repeat-like 198 440 IPR036322 GO:0005515
Dere04g0927 460 Coils Coil 98 125 - -
Dere04g0927 460 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 15 457 - -
Dere04g0927 460 MobiDBLite consensus disorder prediction 32 59 - -
Dere04g0927 460 FunFam WD-40 repeat family protein 241 457 - -
Dere04g0927 460 ProSitePatterns Trp-Asp (WD) repeats signature. 347 361 IPR019775 -
Dere04g0927 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 369 IPR001680 GO:0005515
Dere04g0927 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 363 - -
Dere04g0927 460 Pfam WD domain, G-beta repeat 323 360 IPR001680 GO:0005515
Dere04g0927 460 SMART WD40_4 280 318 IPR001680 GO:0005515
Dere04g0927 460 SMART WD40_4 364 403 IPR001680 GO:0005515
Dere04g0927 460 SMART WD40_4 321 360 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0927 Dere-ChrDere04 9743272 9748139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0927 282 440 Miscellaneous Gene Families AT5G08390 26.415 3.80e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0927 04 9743272 9748139 Dere04g0927 04 9743272 9748139 ECH