Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0738 ATGGAGGACACTGGGAGTTTTCTCAACTCTGCTAACTTATCTCGTATAGTAGTGGCCGTGGCTGCTGGTGAAGCACATACCCTCGCCCTAACTGGGGATGGGTGTGTATATTCTTGGGGAAGAGGAATACTGGGGCGACTTGGGCGAGGATCGGAAGAGGACGAGCTTTTTCCTGTTCAGGTCAAGTTTGAAAACCGCAATACAGCCGGAGACGCTGTCAAAATTGTGGGAATTGCTGCCGGTGCCTATCATAGTATTGCTCTAGCAGATCCTACTGAATTAACCAAACCCACTTTTATGGATGACAATTCACCATGTTGGATGATGGATCAGTTTGGTGCTGGGGTTACAATATCTGACTACATCCTTGACAGTTGTATGGATGGTCAACTTGGTATTAACGAAGAGGACTTGCATGACACTAATGGAGATAAGTCTCTAGTGCCCTGCTTATTAAACAAATTTCTTGAGTTGCACCCTCCTGATTCTTCAACAGACATGCCAGAAGAAGAAAGTAAAGCATCACTGAAGATATGTTGTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCTTGGGGCCCTTTGGATGTGGGGAAACTGCCCACAGAAAAGCAAAGAAGGAGAGTTCTCTCTAGTAAGCAGTTTCACTCCCACACCAGTGTGGGATTTCCATGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTGGCACTGGTTACTGCAGGAGAATCATATGTGAGTGAAGATCTCGTGTGCTATTCTTGGGGTAACAACAACCATGGTCAATTAGGCTTGGGAGATCGGGAGAGCAGGCCACGTCCAGAAGTTGTAAAGACTTTTGACCAGGAGTCACCCTGGGCAGTTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTTACTCACAAAAAGAGACCTAGTGACACATCAGAAAGCGTGTGCTGGACGTTTGGTCTTGGGGACAATGGGCAACTTGGTCATGGGACCACACAAAGCGAATTGTTTCCTACATCTGTTAAAGAATTGCCACAACATGTATATCTAACTTCTATCGACTGTGGCTTGTTTCATAGCAGCGTTGTTTCATCAGCTGGGGATGTGTGGTCATGGGGAATGGAGAGGGGTCTTGGCCTGTGCCCTGATGCTACTTATGCTGGAACTGATTCTGGGGATGCCCTCTCTCCCCTTCTTGTCCCGTGCTGGCCATATCAGCCTAAATTTCCAGAGCCAATCCAAGTTGCTTGTGGAGCTGCACATACTGTTATTGTTGCGCAGGGGGGATATAGGTTGTGGTCTTGGGGTAGAGGAAGAAGTGGAGTTCTTGGAAATGGCAAGACTGTAGATTTTTACACTCCCACATTAGTGTTATGGCCTCCGCTGATAGAGGATTTCAAGCAAGAGGAGCTAAAGAGTACGGGAGAGCAAGATAAGATCACAGAAAAGGAGACTGAAGCAGTCACAGAAACAGATGAGAAATTAGCTTCAGCGTTGAATGAACTGAAGCTCCTTCAGACGAAACTTTCTGTAATGGAGAGATATGCTAGTATACTTCACGGTTCAATTTTTGGGAAACCTTTTGATGAGCACGATATCCCAGTGTCGTTGAGGAACTCAGGTGTATTCGACATTGCAAAAGAATGGGAGAACATGTTAGAGGAAGCAGATCATAGTAGGCTAATTAGATTGGAATTGTTTTACAGAAACATGCTTGCTGGTGTGAAAGATAAACTAATGAAGAGAAGGATCAGGGAGATTATAAAGGAATGCCTCCAATCTTCAGAAGTCGCAAGACAGAATACATAG 1824 0.4545 MEDTGSFLNSANLSRIVVAVAAGEAHTLALTGDGCVYSWGRGILGRLGRGSEEDELFPVQVKFENRNTAGDAVKIVGIAAGAYHSIALADPTELTKPTFMDDNSPCWMMDQFGAGVTISDYILDSCMDGQLGINEEDLHDTNGDKSLVPCLLNKFLELHPPDSSTDMPEEESKASLKICCVKAGGMMSLAIDNLGALWMWGNCPQKSKEGEFSLVSSFTPTPVWDFHGHTVVKVACGNEHVVALVTAGESYVSEDLVCYSWGNNNHGQLGLGDRESRPRPEVVKTFDQESPWAVYEVACGAFHTALLTHKKRPSDTSESVCWTFGLGDNGQLGHGTTQSELFPTSVKELPQHVYLTSIDCGLFHSSVVSSAGDVWSWGMERGLGLCPDATYAGTDSGDALSPLLVPCWPYQPKFPEPIQVACGAAHTVIVAQGGYRLWSWGRGRSGVLGNGKTVDFYTPTLVLWPPLIEDFKQEELKSTGEQDKITEKETEAVTETDEKLASALNELKLLQTKLSVMERYASILHGSIFGKPFDEHDIPVSLRNSGVFDIAKEWENMLEEADHSRLIRLELFYRNMLAGVKDKLMKRRIREIIKECLQSSEVARQNT 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0738 607 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 433 IPR000408 -
Dere04g0738 607 PRINTS Chromosome condensation regulator RCC1 signature 430 451 IPR000408 -
Dere04g0738 607 PRINTS Chromosome condensation regulator RCC1 signature 75 88 IPR000408 -
Dere04g0738 607 PRINTS Chromosome condensation regulator RCC1 signature 361 379 IPR000408 -
Dere04g0738 607 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Dere04g0738 607 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 154 - -
Dere04g0738 607 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
Dere04g0738 607 Pfam Regulator of chromosome condensation (RCC1) repeat 259 307 IPR000408 -
Dere04g0738 607 Pfam Regulator of chromosome condensation (RCC1) repeat 322 367 IPR000408 -
Dere04g0738 607 Pfam Regulator of chromosome condensation (RCC1) repeat 33 88 IPR000408 -
Dere04g0738 607 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 256 310 IPR000408 -
Dere04g0738 607 Coils Coil 493 513 - -
Dere04g0738 607 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 91 IPR000408 -
Dere04g0738 607 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 371 IPR000408 -
Dere04g0738 607 SUPERFAMILY RCC1/BLIP-II 16 89 IPR009091 -
Dere04g0738 607 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 195 247 IPR000408 -
Dere04g0738 607 SUPERFAMILY RCC1/BLIP-II 172 466 IPR009091 -
Dere04g0738 607 Gene3D - 4 253 IPR009091 -
Dere04g0738 607 Gene3D - 254 504 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0738 Dere-ChrDere04 7460230 7463335 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0738 04 7460230 7463335 Dere04g0738 04 7460230 7463335 ECH