Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0716 ATGGTAGAACGAGCCACGAGCGACATGCTCATTGGCCCTGATTGGGCTATGAACATCGAGATCTGTGACATGCTGAATAATGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAGAATTCAAAAGTTCAACTTCTTGCACTAACTCTATTGGAGACAATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCAGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGCCAAGAAGAAGCCTGATTTTCATGTCAGAGAGAAGATACTGATTCTTATAGATACCTGGCAAGAGGCTTTTGGAGGACCAAGGGCAAGATACCCACAGTATTATGCTGCATACCAAGAACTGCTGCGTGCTGGGGCAGTATTCCCTAAGAGGTCTGAGCAATCTGCACCTGTGTTCACACCTCCACAAACACAACCATTGGCATCATACCCTCAAAATTTACGCAATGCCGAGGTCCATCAAGACACAGCTGAGTCCTCTGCAGAGCCTGAGTTTCCAACATTAAGTTTGACTGAAATTCAGAATGCACGTGGCATTATGGATGTGCTTGCAGAAATGCTCAGTGCATTAGAACCAAGTAACAGAGAAGGTCTTAGCCAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAAATTACAAGCAGAGAGTGGTACACCTTGTTAACTCTACTTCGGATGAGTCATTGCTATGCCAAGGACTAGCTCTCAATGATGATCTGCAGCGAGTATTGGCGAAGCATGAAGCCATTGCTTCTGGTATTTCTGCTGCAAATGAAACACAGAAATTGAAGTCGGCTCCTGCTGGAGCACTTGTAGATATTGATGGTCCTTTAATTGATAATGAATATACTAGCAAACAAAATGATGGAAGATCCAGTTCTAGTGCTGAAGGTGGGTCCCAAACATTGAATCAATTGTTGCTTCCTGCTCCCCCAACATCTAATGGTTCAGCTCTCCATGCTAAGGCTGATCCCAAAATGGACTTGCTCAGTGGTGATGATTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCATCCAGCAACTCCTGTGTCTCAACAGAATGCCCTTGTTCTTTTTGACATGTTTTCAAATGGAAACACTGTACCCACTTCTGTCAACACACAGCCAACCCAGCCAACTAATGTTTCTGGACAAACCAGTCCATTAGGTCCCCAAGTTCCACAGCAGCAGACTTTCATATCTACAGAGAGTGCTTTTTATGCCAATGGAAGTGTGCCTAATGTGGGGTCACCTCGGTATGAGCAATCGCCATACTCACAAAGCACAGGTCCTGCCTGGAATGGTCAGGTTGCACAGCAGCAGCAGTCATCTTCGCCAGTTTATGGTGCACAAAGCAGTGAATCATTGCCACCACCACCCTGGGAAGCGCCACCAGCAGATAATAGTAGTCCAGTGGTAGGTACTCATTATCCCCAACCACTGCAAGTCACTCAAGTGGTTATGACCCATGTACACAGTGGTGCACATCCTCAGGGACTTCCAGCATTGGGGAATGACCAAGTTGTTGGTATGTATATGCAGCCAAATGCTAACAGCCCTATGTCACCAATGAATAGCCGTGCTGTTCAAAGCAATCCATTGGGCTTGCACCCTCAACATATTCAGGGTGGCGGTGGGCCTTATATGGGTATGGTTTCGCCTCAAATGCAAACTGCTCCTGTGGCATCTATGTATCCTCAACAGATGTATGGCAACCAATTCTTAGGATATGGCTATGGTCAGCAGCAAAGGGTTCCATACCTTGAGCAGCAAATGTATGGCCTATCGGTTAGAGATGATAATGGTTTTAGAAACTCCTACCCAGTTTCTGCTTCATCTTATGTGCCACCTGGCAAGCCTTCCAAGCCAGAGGATAAGTTGTTTGGGGACCTTGTTGACATGGCAAAAGTCAAGCCAAAACCCACACCTGGCCGAGCTGGTAGCATGTAA 2010 0.4577 MVERATSDMLIGPDWAMNIEICDMLNNDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIAKKKPDFHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPKRSEQSAPVFTPPQTQPLASYPQNLRNAEVHQDTAESSAEPEFPTLSLTEIQNARGIMDVLAEMLSALEPSNREGLSQEVIVDLVEQCRNYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHEAIASGISAANETQKLKSAPAGALVDIDGPLIDNEYTSKQNDGRSSSSAEGGSQTLNQLLLPAPPTSNGSALHAKADPKMDLLSGDDYNSPKAETSLALVPLGEQHPATPVSQQNALVLFDMFSNGNTVPTSVNTQPTQPTNVSGQTSPLGPQVPQQQTFISTESAFYANGSVPNVGSPRYEQSPYSQSTGPAWNGQVAQQQQSSSPVYGAQSSESLPPPPWEAPPADNSSPVVGTHYPQPLQVTQVVMTHVHSGAHPQGLPALGNDQVVGMYMQPNANSPMSPMNSRAVQSNPLGLHPQHIQGGGGPYMGMVSPQMQTAPVASMYPQQMYGNQFLGYGYGQQQRVPYLEQQMYGLSVRDDNGFRNSYPVSASSYVPPGKPSKPEDKLFGDLVDMAKVKPKPTPGRAGSM 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0716 669 ProSiteProfiles GAT domain profile. 176 264 IPR004152 GO:0035091|GO:0043130
Dere04g0716 669 MobiDBLite consensus disorder prediction 293 311 - -
Dere04g0716 669 Gene3D - 180 271 IPR038425 -
Dere04g0716 669 ProSiteProfiles VHS domain profile. 5 134 IPR002014 GO:0035091|GO:0043130
Dere04g0716 669 MobiDBLite consensus disorder prediction 430 472 - -
Dere04g0716 669 CDD GAT_GGA-like_plant 184 262 - -
Dere04g0716 669 FunFam TOM1-like protein 2 1 144 - -
Dere04g0716 669 SUPERFAMILY GAT-like domain 135 265 - -
Dere04g0716 669 SMART VHS_2 1 130 IPR002014 GO:0035091|GO:0043130
Dere04g0716 669 CDD VHS 1 128 - -
Dere04g0716 669 MobiDBLite consensus disorder prediction 430 496 - -
Dere04g0716 669 Gene3D - 1 131 IPR008942 -
Dere04g0716 669 MobiDBLite consensus disorder prediction 390 414 - -
Dere04g0716 669 MobiDBLite consensus disorder prediction 292 311 - -
Dere04g0716 669 Pfam GAT domain 190 264 IPR004152 GO:0035091|GO:0043130
Dere04g0716 669 FunFam TOM1-like protein 2 178 268 - -
Dere04g0716 669 Pfam VHS domain 2 125 IPR002014 GO:0035091|GO:0043130
Dere04g0716 669 SUPERFAMILY ENTH/VHS domain 1 134 IPR008942 -
Dere04g0716 669 PANTHER TOM1-LIKE PROTEIN 1 660 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0716 Dere-ChrDere04 7202084 7210009 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0716 04 7202084 7210009 Dere04g0716 04 7202084 7210009 ECH