Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0593 ATGGGTACTGCATCTCTTCGATACCCCCTTAAATTCGCCGTCCACTCCCATCGGAAAGTGGACTGCTCAAGTTCCGAGTTTCCTCTTAATGTGGATGTTTCAAGAATTAGCTTGTGCCCAAGCTCTGCGTGCTCCACAGCTTCGAAGGGATTCATAGACAGAATATGTGCATGTCCCAACATTGATGATTTCAACTGGGAGAAAGTCCCAACCCCCATACTTGATGCTGTTGAAAATCCTCTTTGCTTGAAGAATTTATCTCTTAAGGAACTTAAGCAATTGGCTGATGAAATCCGTTCGGAATTGTCTTTGATTATGTCGGAGGCACAAATCTCATTTAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACACCATGTTTTTCATGCTCCAGTGGACAAGATTTTGTGGGATGTTGGAGATCAAACATATACGCATAAGATTCTTACTGGAAGGCGATCCCTTATGAAGACAGTGAGACAAAAGAAAGGCCTTTCTGGGTTTACATCCCGATTTGAGAGTGAATATGATGCATTTGGTGCGGGTCATGGATGCAACAGTATTTCTGCAGGACTTGGAATGGCTGTTGCACGTGATATGAAGGGGAGGCGAGATCGTGTAGTTGCAGTTATTAGCAATTGGACAACTATGGCAGGTCAGGTTTATGAGGCAATGTGCAATGCAGGTTATTTGGACTCGAATATGGTAGTAATTTTGAATGACAGTCGTCACTCTTTACATCCAAAAGTTGAGGAGGGCCCAAAGGCATCAATCAATGCACTATCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAAGCTTAGAGAAGTTGCTAAAGTTGTTACAAAACGAATTGGTGGCGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCGCGTGGTATGATGGGGCCTCTGGGTTCCACACTTTTTGAAGAGCTTGGCTTGTACTACATAGGCCCTGTGGATGGACACAACATTGAGGAACTAATTTGTGTTCTAGAAGAAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGGTTCATGTAATAACTGATGAAAATCAAGGAGCAGAATATAATCAGACAAGTGATAAAGCAGACAGGCAACAGGATGTTTCCAGCAAATTTGATCCCTTATATCAAGCTATTCAACCTCGAAAATATAGTGATTGCTTTGTGGAAACTTTGGTTATGGAAGCTGAGAAAGACAAAGATATTGTGGTAGTTCATGCAGGAATTATGATGGAACCATCACTTCAACTGTTTCAAGAAAAAATGCCGGATAAGTTTTTTGATGTCGGGATTGCTGAGCAACATGCAGTTACATTTGCTTCTGGCTTGGCATGTGGTGGATTGAAGCCATTTTGCATAATACCTTCTTCCTTCCTACAGAGAGCTTATGACCAGGTGATCCATGATGTTGATCAACAGAAAATTCCGGTCCGTTTTGTAATTACAAGTGCAGGATTGGTAGGATCTGATGGTCCCATCCAATGTGGGGCATTTGACATAACCTTCATGTCATGCTTGCCAAACATGATCGTCATGGCACCATCTGATGAGGTTGAACTCGTGCACATGGTAGCTACTGCTAGTCATGTCAATGATCGGCCAATTTGCTTCCGATATCCAAGGGGTGCTATAGTTCGGAACAACTACACTGTATGCAATGGGATACCCCTTGAGATTGGAAAAGGGAGAGTTCTTGTTGAAGGAAATGAAGTTGCTTTACTGGGATATGGATCAATGGTCCAGAACTGCCTAAAAGCTCAAACACTTCTTGCAAAGCTAGGGATTGAGGTCACAGTTGTTGACGCAAGGTTCTGCAAGCCCCTGGACATCAATCTTCTCAGGCAGCTTTGTAAACACCATTCGTTCCTGATTACTGTTGAGGAAGGCTCTATTGGAGGATTTGGTTCTCATGTTGCTCAATTTCTTGCTCTTGATGGACGACTTGATGGAAGAATTAAGTGGCGACCTATTGTCTTACCCGACAGTTACCTAGAGCATGCATCACCAAATGAGCAGCTTGATCAGGCGGGATTGACTGGTCATCACATAGCTGCGACTGCATTGAGTTTGCTGGGCCGTACCCGCGAAGCCCTCCTTTTTATGTGTTCATGA 2145 0.4364 MGTASLRYPLKFAVHSHRKVDCSSSEFPLNVDVSRISLCPSSACSTASKGFIDRICACPNIDDFNWEKVPTPILDAVENPLCLKNLSLKELKQLADEIRSELSLIMSEAQISFKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYTHKILTGRRSLMKTVRQKKGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDMKGRRDRVVAVISNWTTMAGQVYEAMCNAGYLDSNMVVILNDSRHSLHPKVEEGPKASINALSSTLSRLQSSKSFRKLREVAKVVTKRIGGGMHEWAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLEEVASLDSMGPVLVHVITDENQGAEYNQTSDKADRQQDVSSKFDPLYQAIQPRKYSDCFVETLVMEAEKDKDIVVVHAGIMMEPSLQLFQEKMPDKFFDVGIAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPIQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATASHVNDRPICFRYPRGAIVRNNYTVCNGIPLEIGKGRVLVEGNEVALLGYGSMVQNCLKAQTLLAKLGIEVTVVDARFCKPLDINLLRQLCKHHSFLITVEEGSIGGFGSHVAQFLALDGRLDGRIKWRPIVLPDSYLEHASPNEQLDQAGLTGHHIAATALSLLGRTREALLFMCS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0593 714 Gene3D - 571 702 IPR009014 GO:0003824
Dere04g0593 714 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 48 709 IPR005477 GO:0008661|GO:0016114
Dere04g0593 714 Coils Coil 88 108 - -
Dere04g0593 714 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 571 703 - -
Dere04g0593 714 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 392 560 - -
Dere04g0593 714 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 77 700 IPR005477 GO:0008661|GO:0016114
Dere04g0593 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 455 IPR029061 -
Dere04g0593 714 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
Dere04g0593 714 CDD TPP_PYR_DXS_TK_like 399 552 - -
Dere04g0593 714 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 703 IPR005477 GO:0008661|GO:0016114
Dere04g0593 714 CDD TPP_DXS 113 363 IPR005477 GO:0008661|GO:0016114
Dere04g0593 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 391 555 IPR029061 -
Dere04g0593 714 Gene3D - 393 563 - -
Dere04g0593 714 SMART Transket_pyr_3 393 558 IPR005475 -
Dere04g0593 714 SUPERFAMILY TK C-terminal domain-like 566 702 IPR009014 GO:0003824
Dere04g0593 714 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Dere04g0593 714 Gene3D - 66 365 - -
Dere04g0593 714 Pfam Transketolase, pyrimidine binding domain 395 554 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0593 Dere-ChrDere04 5917491 5923463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0593 435 685 Acyl Lipid Metabolism Gene Families AT1G55510 23.488 5.38e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0593 04 5917491 5923463 Dere04g0593 04 5917491 5923463 ECH