Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0541 ATGAAGCATACTTCGTCTGAGGCAGTCCCGTCTTTATCTTCTGCACCTTCTTTTACAGACCAATCGCACGTTGCCACTTCATCGTCGTCGTTGGCGTTACCTGACAAACCCGTTTTAGGCTCTTCGGCGGCGGCTCCGGAGGACTTAGCTGTGGGGTCAAGGGATGGAGGCGGCGCCCAGGAGACCGTGACCGTCGAACGCCGGGGTGAGTACTCGGCCGTTTGCCGATGGACGGTTCATAATTTTCCCCGGATAAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTTGGAGGTTATGATTGCCGCCTCTTGATATACCCCAAGGGTGACTCCCAAGCCTTGCCGGGCTACATCTCCATCTACCTCCAAATCATGGACCCTCGGGGCACTTCGTCCTCCAAATGGGACTGCTTTGCTAGTTACCGTTTAGCAATCGTGAACGTCACCGATGATTCCAAGACCATTCATCGGGATTCGTGGCATCGGTTCTCAAGTAAGAAGAAATCACACGGGTGGTGTGATTTCACGCCTTCTTCGACTGTATTGGATTCGAAATTGGGTTATTTGTTTATTAGTGATTCGGTATTGATAACCGCCGATATTCTTATTCTTAATGAGTCGATTAATTTTACCCGAGATAACAATGAGTTGCTATCGTCGGCATCTTCTTCTTCATCATCCGTGATATCTTCCTCTGTTGTCGCGGGCCCAGTGTCCGACGTGTTGAGTGGAAAATTCACTTGGAAAGTACATAATTTCAGTTTATTCAAGGAGATGATAAAAACTCAGAAGATAATGAGCCCAGTTTTTCCAGCTGGGGAGTGTAATTTGCGGATTAGTGTGTATCAGAGCTCGGTTAATGGGGTCGAATATCTATCAATGTGCTTAGAAAGCAAGGATACGGACAAGACGGTGATGTTGTCTGATAGGAGTTGCTGGTGTTTATTTCGAATGTCAGTCTTGAACCAGAAGCCAGGTTCGAATCACATGCATAGGGACTCGTATGGGCGGTTTGCAGCTGATAATAAGAGTGGTGATAATACGAGCTTGGGATGGAATGATTATATGAAGATGTCAGATTTTGTTGGGCCTGATTCAGGGTTTCTGGTGGATGACACTGCAGTTTTTAGTACATCATTTCATGTGATTAAAGAGTTTAGTAGCTTCTCTAAGAATGCGGCTTTAATTGCAGGGAGAAGTGGGAGTGGGGCAAGGAAATCAGATGGTCATATGGGTAAGTTCACTTGGAGGATTGAAAATTTCACAAGGTTAAAGGATTTATTGAAGAAGAGAAAAATTACGGGTCTTTGCATCAAGAGCAGGAGGTTTCAAATTGGTAATCGGGATTGTCGTCTTATAGTATATCCCCGAGGGCAGTCTCAGCCGCCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGATTGTCAGTTGTGAACCAGAAGATGGAGGAGAAGTCTGTCACTAAGGAATCTCAGAACCGCTACTCCAAGGCTGCAAAAGATTGGGGCTGGCGTGAATTTGTGACCCTAACCAGTCTCTTTGACCAAGATTCAGGTTTTCTTGTACAGGACACTGTTGTGTTCTCAGCAGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTGATCGATCATGATTCTGCGTTGAGTAGCAGTGGTTCCCTTATTGATAGGTATGTAAAAAGAAGTACATTCACGTGGAAAGTGGAGAATTTCCTGTCATTTAAGGAAATAATGGAGACTCGAAAGATTTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTGTACGAGTCCTTTGACACCATATGTATTTATCTGGAGAGTGACCAGGCTGTTGGGAGTGATCCAGATAAAAACTTTTGGGTCAAATACAGGATGGCTGTTGTGAATCAAAAGAATCCAGCCAAGACGGTGTGGAAGGAATCCTCTATATGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATATTGGAAGCTGATGCAGGGTTTCTTGTCCGTGACACTGTTGTTTTTGTCTGTGAAATATTGGATTGCTGTCCTTGGTTTGAGTTCTCGGACTTAGAGGTTCTAGCTTCAGATGATGATCAGGATGCTTTGACAACTGATCCTGATGAACTCATTGACTCTGAAGACAGTGAAGGAATAAGTGGAGATGAAGAAGACATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCACCTAACATATGGAGATAATCCTTCACAGCCACAAGTAACTTTAAGAGAGAAACTCTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTCCGGGTTTATCTTGATGATCCTGTGAAAGTAAAGCGTTTACTTCTTCCAACCAAGCTCTCTGGTAGTTGTGATGGGAAGAAAGTCAATAAGGCTGATGAATCTTCCCCTAGTTTGATGAATTTGCTGATGGGAGTTAAGGTCTTGCAACAGGCAATCATTGATTTACTTTTGGATATAATGGTGGAATGCTGCCAACCTTCTGAAGGGTCTTCTGTTGCTGATTCTCCTGATGCATGCTCAAAAGCATCTCCATATGGCAGTGGAGCTGCTAGTCCTCTTGAATGTGATAGAGAAAATGGAGCAACAGAATCTGCACAATTTCCTGTTTATGAGAGATTGGATTCTGCTGACGAAGAGAGTAGTAGTGTATCTGCTGTACAAAGCTCTGATTTAAATGGCACCGTTATTCAGGAGAAATCTCTTCCTGGACAACCTATTTGTCCACCAGAAACATCTGCTGCTGTTTCAGAAAATCCATCCTTTCGGTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAACCCTTGATGGGGCTGTTCCACAAGGTTGCCCTGAGCCACGACGGCGGCCTCAGTCTGCACAGAAAATTTCCCTTGTGTTGGACAAAGCACCTAAGCATTTGCAAGCTGACCTAGTAGCTCTGGTTCCCAAATTGGTTGAGCATTCAGAACATCCACTAGCTGCCTATGCACTTCTTGAGCGACTTCAAAAGCCAGATGCTGAACCTGCTTTGCGAATACCTGTTTTTGAGGCTCTTAGTCAACTGGAGTGTGGTAGTGAAGTGTGGGAACGTGTCCTATTCCAATCATTTGAGCTTTTGACAGACTCAAATGATGAACCCCTCACTGCGACAATAGATTTTATATTCAAAGCAGCATCTCAGTGTCAACATCTCCCTGAAGCAGTTAGATCTGTTCGTGTCAGACTCAAAAATCTTGGTCTTCAGGTTTCACCTTGTGTCCTTGATTTTTTGAGCAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACTATACTGAGGGACATTGATTGTGACGATGACTTGGGTGACAGTTGCTCAGCACTGTCATGTGGGCTTTTCTTATTTGGTGAACATGGCACTGCTCCTACTGGACTGCATGTGGTTGATGAGCAGGCTTTCCAAGCTAGTTGCTATTTTTCTGATATTTATGTACTGATCGAGATGCTATCTATTCCTTGTCTTGCTGTTGAAGCTTCTCAAACCTTTGAGAGAGCTGTAGCTCGAGGTGCAATTGGTGCTCAGTCTGTAGCCTTAGTTTTAGAAAAGCGTGTCTCACAAAGATTGACTAATAATGCCAGAAATGTTTCTGAAAGTTTCCCTCATTCAGATGCTGGCGCAGAGGGAGATGCCAATGGACCCTTTGGTGTTCAAAGAGATGATTTTACTTCAGTTCTTGGTCTTGCTGAAACCATGGCACTCTCCAGAGACCCGTGTGTGAAAGAATTTGTAAAGTTACTATATATGATATTGTTTAGATGGTATGCCAATGAATCTTATCGTGGGAGGATGTTGAAGAGGCTTGTTGACCGTGCCACCAGCACTACTGACAATGGTCATGAAGTAGATTTGGATTTGGATATCTTAGTTACTTTGGTCTGTGAGGAGCAGGAAATTATCAGACCAGTTTTGTGTATGATGCGTGAAGTTGCTGAACTTGCAAACGTCGATCGGTCTGCCCTATGGCACCAGTTATGTGCTAGTGAAGATGAAATTATTCGTCTTCGCGAAGAAAAGAAAGCTGAGATTTCTAATGTGGCTAAGGAAAAAGCTATTGTTGCACAAAAGCTGAGTGAATCTGAGGCCACAAGCATTCGCCTCAAGTCTGAAATGAGGGCTGAGATGGATCGGTTTGCTCGGGAGAAGAAGGAGCTACTTGAACAAATACAAGAAGTTGAGAGTCAGCTTGAGTGGCTTCGCTCAGAGCGGGATGATGAAATAGCAAAGCTCTCTGCTGAGAAGAAAGCTCTTCAGGACCGTGTGCATGATGCAGAGACACAACTTTCCCAATTGAAGTCCCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCACTTGCTGAAAGATTGAAGACTGCCGAAGCTGCACGAAAGAGATTTGATGAAGAACTGAAAAGATATGCAACAGAAAATGTCACTCGGGAAGAAATACGGAAGTCGCTTGAGGATGAAGTTCGTAGACTGACACAAACTGTTGGGCAGACTGAGGAAGAAAAACGAGAGAAGGAAGAACAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAGTCAAAATTGCAGGCTTGCCAGCAATATATTCACACGCTGGAGGCTTCACTTCAGGAGGAAATGTCACGGCATGCTCCTCTATACGGTGCTGGTCTGGAGACTCTATCAATGAAAGAGTTGGAAACATTGTCACGTATTCATGAAGAAGGGCTGAGGCAGATCCATGCCCTTCAACAGCGTAAAGGTAGCCCAGCTGGCAGCCCTCTCGTGAGTCCACATGCCCTCCCACACAATCATGGATTATATCCCTCTGCTTCGCCCCCATTGCCTGTGGGACTCCCTCCATCACTCATCCCCAATGGGGTAGGCATCCACAGCAATGGCCACATCAATGGTGCAGTTGGACCCTGGTTTAACCACACTTGA 5076 0.4435 MKHTSSEAVPSLSSAPSFTDQSHVATSSSSLALPDKPVLGSSAAAPEDLAVGSRDGGGAQETVTVERRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVTDDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVLDSKLGYLFISDSVLITADILILNESINFTRDNNELLSSASSSSSSVISSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGPDSGFLVDDTAVFSTSFHVIKEFSSFSKNAALIAGRSGSGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDLIDHDSALSSSGSLIDRYVKRSTFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVKYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDILEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASDDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPVKVKRLLLPTKLSGSCDGKKVNKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGSSVADSPDACSKASPYGSGAASPLECDRENGATESAQFPVYERLDSADEESSSVSAVQSSDLNGTVIQEKSLPGQPICPPETSAAVSENPSFRSKTKWPEQSEELLGLIVNSLRTLDGAVPQGCPEPRRRPQSAQKISLVLDKAPKHLQADLVALVPKLVEHSEHPLAAYALLERLQKPDAEPALRIPVFEALSQLECGSEVWERVLFQSFELLTDSNDEPLTATIDFIFKAASQCQHLPEAVRSVRVRLKNLGLQVSPCVLDFLSKTINSWGDVAETILRDIDCDDDLGDSCSALSCGLFLFGEHGTAPTGLHVVDEQAFQASCYFSDIYVLIEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLEKRVSQRLTNNARNVSESFPHSDAGAEGDANGPFGVQRDDFTSVLGLAETMALSRDPCVKEFVKLLYMILFRWYANESYRGRMLKRLVDRATSTTDNGHEVDLDLDILVTLVCEEQEIIRPVLCMMREVAELANVDRSALWHQLCASEDEIIRLREEKKAEISNVAKEKAIVAQKLSESEATSIRLKSEMRAEMDRFAREKKELLEQIQEVESQLEWLRSERDDEIAKLSAEKKALQDRVHDAETQLSQLKSRKRDELKKVVKEKNALAERLKTAEAARKRFDEELKRYATENVTREEIRKSLEDEVRRLTQTVGQTEEEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLETLSMKELETLSRIHEEGLRQIHALQQRKGSPAGSPLVSPHALPHNHGLYPSASPPLPVGLPPSLIPNGVGIHSNGHINGAVGPWFNHT 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0541 1691 PANTHER TRAF-LIKE FAMILY PROTEIN 34 1691 - -
Dere04g0541 1691 Coils Coil 1418 1523 - -
Dere04g0541 1691 CDD MATH 582 704 IPR002083 GO:0005515
Dere04g0541 1691 CDD Prefoldin 1415 1548 - -
Dere04g0541 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 58 208 IPR008974 GO:0005515
Dere04g0541 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 403 557 IPR008974 GO:0005515
Dere04g0541 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 240 387 IPR008974 GO:0005515
Dere04g0541 1691 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 573 706 IPR008974 GO:0005515
Dere04g0541 1691 ProSiteProfiles MATH/TRAF domain profile. 412 548 IPR002083 GO:0005515
Dere04g0541 1691 ProSiteProfiles MATH/TRAF domain profile. 244 381 IPR002083 GO:0005515
Dere04g0541 1691 Coils Coil 1531 1565 - -
Dere04g0541 1691 SUPERFAMILY TRAF domain-like 413 554 - -
Dere04g0541 1691 CDD MATH 245 377 IPR002083 GO:0005515
Dere04g0541 1691 SUPERFAMILY TRAF domain-like 580 705 - -
Dere04g0541 1691 ProSiteProfiles MATH/TRAF domain profile. 72 202 IPR002083 GO:0005515
Dere04g0541 1691 Gene3D - 1436 1641 - -
Dere04g0541 1691 ProSiteProfiles MATH/TRAF domain profile. 580 704 IPR002083 GO:0005515
Dere04g0541 1691 MobiDBLite consensus disorder prediction 1629 1652 - -
Dere04g0541 1691 SUPERFAMILY TRAF domain-like 71 209 - -
Dere04g0541 1691 Pfam MATH domain 444 550 IPR002083 GO:0005515
Dere04g0541 1691 Pfam MATH domain 81 204 IPR002083 GO:0005515
Dere04g0541 1691 Pfam MATH domain 593 700 IPR002083 GO:0005515
Dere04g0541 1691 MobiDBLite consensus disorder prediction 945 959 - -
Dere04g0541 1691 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g0541 1691 MobiDBLite consensus disorder prediction 1246 1265 - -
Dere04g0541 1691 SUPERFAMILY TRAF domain-like 242 387 - -
Dere04g0541 1691 SMART math_3 249 362 IPR002083 GO:0005515
Dere04g0541 1691 SMART math_3 417 529 IPR002083 GO:0005515
Dere04g0541 1691 SMART math_3 585 685 IPR002083 GO:0005515
Dere04g0541 1691 SMART math_3 74 182 IPR002083 GO:0005515
Dere04g0541 1691 CDD MATH 413 548 IPR002083 GO:0005515
Dere04g0541 1691 CDD MATH 76 202 IPR002083 GO:0005515
Dere04g0541 1691 MobiDBLite consensus disorder prediction 935 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0541 Dere-ChrDere04 5440472 5449222 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0541 04 5440472 5449222 Dere04g0541 04 5440472 5449222 ECH