Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0398 ATGGCCTCAGGAGCACAGCCTCACGGTCTAAGTGAAGCAGAATTTGCAGAACTTGAGCCCATCATCAACAAATACCACAAATTTGAGGCTTCTTCCAACACATGCACTTCCATCACAACACAGCGAATCGAGGCTCCTGCACGGACGGTGTGGGGTTTCATTCGGAGCTTCGAGAACCCTCAGAAATACAAGCACTTCATCAAGAGCTGCAACATGAAAGGTGACGGAGGCGTAGGAAGCATCAGAGAGGTCACTGTGGTTTCAGGTCTCCCAGCATCCACCAGCACCGAGAGGCTCGAGATCTTAGACGATGACAACCACGTACTGAGCTTTAGGGTACTGGGTGGCCAGCACCGACTCAAAGATTATCGCTCTGTTACGTCTGTGAATGAGTTTCAGATGGAAGGTGGTAAGGTGTACACTATAGTTGTGGAGTCATATATTGTCAACATACCACAAGGGAATACTGCAGAGGATACCAAGATGTTCGTGGACACTGTGGTCAAGCTCAACCTTCAGAAACTTGGCCTCCTCGCCATCTCTAGCCTCCATGCACAACATTAA 564 0.4911 MASGAQPHGLSEAEFAELEPIINKYHKFEASSNTCTSITTQRIEAPARTVWGFIRSFENPQKYKHFIKSCNMKGDGGVGSIREVTVVSGLPASTSTERLEILDDDNHVLSFRVLGGQHRLKDYRSVTSVNEFQMEGGKVYTIVVESYIVNIPQGNTAEDTKMFVDTVVKLNLQKLGLLAISSLHAQH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0398 187 CDD PYR_PYL_RCAR_like 40 175 - -
Dere04g0398 187 PANTHER - 34 175 - -
Dere04g0398 187 Gene3D - 2 187 IPR023393 -
Dere04g0398 187 Pfam Polyketide cyclase / dehydrase and lipid transport 39 175 IPR019587 -
Dere04g0398 187 SUPERFAMILY Bet v1-like 35 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0398 Dere-ChrDere04 4117035 4117598 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1772 05 27514994 27518342 Dere04g0398 04 4117035 4117598 CCT
Dere04g0398 04 4117035 4117598 Dere04g0398 04 4117035 4117598 ECH