Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0391 ATGTTAAAGGTTTCTTCCGTTCATCTTCGAAGAAACCTAATGGCCGACGAAGCACAGTATTCCTCTGGCACAGAGACCACACCTCACAAGCGTAAGTACGAAGAGCCATCGCTCTCTCAATCCGCTACTCACAGACCCACTGGCTTCTCTGCGCCTATCGCGTCTCCATCTCCCGATGGTGCTCACGCACCGCCTCCATCCTACAATAGCGTGCCTCCCCCGGCGGCTAGTGGTATCGAGCTTGCCAAGCAGCGTGCACAGGAGGTGGCAGCTCGCCTCTTAAACAATATGAGCAGTGGAACTGGTGGGCTGGATGCGAAGCGGCCCAAGGTTGAGAACGGTGCTACAGGGTTTGATTCCAACGACGCGAAACCTCAATACTCAGTCCCTTCAACTGCACCCATTTCTTATGCCTATCAGGGTACGAGCAAAAAGATAGACATCCCTAATGGAAGGGTCGGTGTAATTATTGGTAAAGGTGGGGAGACGATCAAATATCTTCAAACGCAGTCTGGAGCAAAGATCCAAGTTACCCGTGATATGGATGCAGACCCGAATTCTCCAACTAGGATGGTAGAACTTATGGGTACTCCTGATCAAATTGCAGCTGCTGAGAAATTGATAAACGAAGTTCTTGCTGAGGCTGAAGCAGGAGGTTCTGGCATTGTTGCTCGGCGACTGACTGGACAAACTGGGTCTGAGCAATTTGTGATGAAAATCCCAAATAATAAGGTTGGCCTTGTGATTGGTAAAGGAGGAGAAACAATAAAGAATATGCAAGCTCAGACTGGAGCACGGATTCAGGTGATACCTTTGCATCTTCCCCCAGGTGACACATCGACAGAAAGAACATTACAAGTTGATGGGACCAGTGAACAAATTGAATCTGCAAAACAGTTGGTTAATCAAGTCATTAGTGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGTTATCCTCAACAAGGTTACCAAGCCCGACCACCCTCTAGCTGGGTTCCCCCTGGTGCTCCTATGCAACAACCTGGCTATGGCTATGTGCAGCCTGGAGCATACTCTGGTCCATCTCCTCAGTATAATATGCCTCAGCCACCATATCCGGGATATCCTCCCCAATCATCTGGTGGATACTCCACCAATTGGGACCAGTCTTCTGTACCACCCCAGCAGTCTACTCATGGTGGTGGTTATGATTATTATGGTCAACAGCCACAGCAACAGCAAAATGCTGGGGGTCCTGCAGCTGCAGCTGATGGGACTGCTTACAATTATGGCCAGCCTCCTTCCTCTGGTTATAACCAACCTGGACAAGGTTATGGTCAGGACAGCTATGGTGGGTATAATGCACCACCACAATCAGGGTATGGTCAGCCACCATCGTATGATCAGCAGCATGGCTATGGCTCGGCCCCCAGCTATGGCAGTGGGAGCAACCCGACACAGGAGGGCCACACTCCCAACTATGGGTCTCAAGGGGACTCAACCCAAGCTCCTCCAGCTGTCCAGACTTCAGTGCCCCAGCAAGGTTATGGTACAAACCAGCAGCCCAGCCCAAACCCTGCTAACTATCCAGCCCAAGGAACTGCTCAGCCTGGTTATGGGATGCCCCCAACTTCCCAAGCAGCTTATGGCAGTCAACCACAAGTACAGTCTGGTTATGGAGCTGGTTATGGACCCCCTCAACCTCAGAAGCCAAGTGGCACTCCTGTCTATGGACAGTCCACACAGTCCCCTAGTACAGCAGGAGGCTATGGTCAGTCTGGCCCGTTGCAACCAGGATATCCTCCTGCTCAGCCGCCGCCTTCTGGCTATGCTCAACCAGAATCTGGTCCACAAAGAGCGCCGCCATATAGTTCTACAGTGCAACCAGGTTATGGTCCCCCACCGTATGGTGCCCCTTCTGGTCAGCCTGGTTATGGTCAGGCACCGCCATCATATAACAGCGGTTCTTATGGTGCTGGTTACACCCAGCCTCCAGTATATTCTGGTGATGGTGCACCTGCGCAGGCTGCTCAACAGGGAGGTGTCGCTAAAGCGTCGCCTCAAAGTTGA 2052 0.5156 MLKVSSVHLRRNLMADEAQYSSGTETTPHKRKYEEPSLSQSATHRPTGFSAPIASPSPDGAHAPPPSYNSVPPPAASGIELAKQRAQEVAARLLNNMSSGTGGLDAKRPKVENGATGFDSNDAKPQYSVPSTAPISYAYQGTSKKIDIPNGRVGVIIGKGGETIKYLQTQSGAKIQVTRDMDADPNSPTRMVELMGTPDQIAAAEKLINEVLAEAEAGGSGIVARRLTGQTGSEQFVMKIPNNKVGLVIGKGGETIKNMQAQTGARIQVIPLHLPPGDTSTERTLQVDGTSEQIESAKQLVNQVISENRLRNPSMSGGYPQQGYQARPPSSWVPPGAPMQQPGYGYVQPGAYSGPSPQYNMPQPPYPGYPPQSSGGYSTNWDQSSVPPQQSTHGGGYDYYGQQPQQQQNAGGPAAAADGTAYNYGQPPSSGYNQPGQGYGQDSYGGYNAPPQSGYGQPPSYDQQHGYGSAPSYGSGSNPTQEGHTPNYGSQGDSTQAPPAVQTSVPQQGYGTNQQPSPNPANYPAQGTAQPGYGMPPTSQAAYGSQPQVQSGYGAGYGPPQPQKPSGTPVYGQSTQSPSTAGGYGQSGPLQPGYPPAQPPPSGYAQPESGPQRAPPYSSTVQPGYGPPPYGAPSGQPGYGQAPPSYNSGSYGAGYTQPPVYSGDGAPAQAAQQGGVAKASPQS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0391 683 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
Dere04g0391 683 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 133 506 - -
Dere04g0391 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 312 IPR036612 GO:0003723
Dere04g0391 683 MobiDBLite consensus disorder prediction 592 606 - -
Dere04g0391 683 Pfam KH domain 145 210 IPR004088 GO:0003723
Dere04g0391 683 Pfam KH domain 237 302 IPR004088 GO:0003723
Dere04g0391 683 MobiDBLite consensus disorder prediction 309 683 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 372 413 - -
Dere04g0391 683 SMART kh_6 232 306 IPR004087 GO:0003676
Dere04g0391 683 SMART kh_6 140 213 IPR004087 GO:0003676
Dere04g0391 683 MobiDBLite consensus disorder prediction 1 76 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 567 586 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 58 72 - -
Dere04g0391 683 FunFam KH domain-containing protein 228 328 - -
Dere04g0391 683 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 423 552 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 309 328 - -
Dere04g0391 683 MobiDBLite consensus disorder prediction 640 655 - -
Dere04g0391 683 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 218 IPR036612 GO:0003723
Dere04g0391 683 Gene3D K Homology domain, type 1 137 228 IPR036612 GO:0003723
Dere04g0391 683 Gene3D K Homology domain, type 1 229 329 IPR036612 GO:0003723
Dere04g0391 683 MobiDBLite consensus disorder prediction 100 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0391 Dere-ChrDere04 4031796 4038306 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0391 04 4031796 4038306 Dere04g0391 04 4031796 4038306 ECH