Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0372 ATGAAAATGGTGTCTACAAAAGCAAGTCGGGATTGTCATGGCCAAGACTCCTCTTACTTTCTAGGATGGCAAGAGTACGAGAGGAATCCTTATCACCCCATTCAAAATCCTTCCGGGATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTCGACATTGTTGAGTCATGGCTTCAAAGAAATCCAGACATAGTTGGGTTGAAGAAAGGCGGAGTATCCGCATTTAGAGAACTCGCACTCTTCCAGGATTATCATGGCTTACCCTCTTTCAAAAACGAACTGGTGAAGTTCATGGCAAAAATAAGAGGGAACAGAGTCAAATTTGCTTCGGACAGACTAGTCCTCACCGCCGGTGCTACATCTGCGAATGAGATTCTCATGTTTTCCCTTGCTGACCCAGGGGAAGCTTTCCTTCTTCCCACTCCCTATTACCCTGGATTTGATAGAGATCTAAAGTGGCGGACTGGGGTTGAAATCGTTCCCATACATTGCATAAGCTCAAATGGTTTCAAAATAACTTGCTCTGCTTTAGAACAAGCCTATCAACATGCCCGAGCACTGAATCTGAACGTTAAAGGGGTATTAATAACTAACCCCTCCAATCCTCTAGGCATAACCTTGAGCAATACCGAGCTTAACCATCTCATTGAGTTCGCAGTTCGGAAGAACATTCATATAATAAGTGATGAAATTTATTCGGGGACAGTGTTCGACTCTCCCAGATTCGTAAGCATCATGGAAGTTGCAAATGAAAGAATCCTGGAGGACTCTGGCATTTGGAGCCGCATTCACATCGTTTATAGTCTGTCCAAGGACCTAGGCGTGCCGGGATTTCGGGTAGGCATGATCTACTCTAATAGCCAAGTGGTGGTGGATGCTGCCACAAAGATGTCAAGCTTTGGATTGGTTTCCTCGCAAACCCAGTATTTGCTGGCCAACTTACTCTCGGACAAGAAATTCACAGAGGATTACATGAAGGAGACTCAGAGGAGACTGAAAAAGCGAAAGGAAATGCTTGTTTCTGGGTTGAGAAAAGCAGGGATTGGGTGTTTGAAGAGCAATGCAGGGCTGTTCTGCTGGGTGGACATGAGGCATCTGTTAAGGTCTGACAGTTTTGAAGCAGAGAAGGAGCTTTGGAAGAGGATTGTTAGGGAAGTAGGATTGAACATATCTCCAGGTTCATCTTGCCACTGCTCTGAAGCGGGGTGGTTCAGAATTTGCTTTGCCAACATGTCTGAAGACACATTACAAGTTGCAATGCGACGGATGAAGGTGTTCACAGATTCAACTATCTCTACTATCAGTGACAGCAGCAGTAATTCTGAAAGAAGGTCACTCGCCACCTGGGTTTCACAGTTATCACCATCCTATGAGTGGGAACCCAACACTTATTTCTGA 1401 0.4504 MKMVSTKASRDCHGQDSSYFLGWQEYERNPYHPIQNPSGIIQMGLAENQLSFDIVESWLQRNPDIVGLKKGGVSAFRELALFQDYHGLPSFKNELVKFMAKIRGNRVKFASDRLVLTAGATSANEILMFSLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIHCISSNGFKITCSALEQAYQHARALNLNVKGVLITNPSNPLGITLSNTELNHLIEFAVRKNIHIISDEIYSGTVFDSPRFVSIMEVANERILEDSGIWSRIHIVYSLSKDLGVPGFRVGMIYSNSQVVVDAATKMSSFGLVSSQTQYLLANLLSDKKFTEDYMKETQRRLKKRKEMLVSGLRKAGIGCLKSNAGLFCWVDMRHLLRSDSFEAEKELWKRIVREVGLNISPGSSCHCSEAGWFRICFANMSEDTLQVAMRRMKVFTDSTISTISDSSSNSERRSLATWVSQLSPSYEWEPNTYF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0372 466 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 293 423 - -
Dere04g0372 466 Pfam Aminotransferase class I and II 41 423 IPR004839 GO:0009058|GO:0030170
Dere04g0372 466 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 269 282 IPR004838 GO:0003824|GO:0009058|GO:0030170
Dere04g0372 466 Gene3D Aspartate Aminotransferase, domain 1 29 423 IPR015422 GO:0003824
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 225 248 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 135 156 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 43 69 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 189 213 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 295 318 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 113 133 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 76 92 - -
Dere04g0372 466 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 263 287 - -
Dere04g0372 466 Gene3D - 63 318 IPR015421 GO:0003824
Dere04g0372 466 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 63 318 - -
Dere04g0372 466 CDD AAT_like 63 425 - -
Dere04g0372 466 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 5 425 - -
Dere04g0372 466 SUPERFAMILY PLP-dependent transferases 8 427 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0372 Dere-ChrDere04 3816965 3819528 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0372 04 3816965 3819528 Dere04g0372 04 3816965 3819528 ECH