Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0112 ATGTCTGCACTCGAAGCGGAGAAGAATGTTGAAGAAGAGAAGGAGGTGGTGAAAGGGGGAGAGCTCTTGTCCTGCGGTGGTACGTGTTGGGATATTATTGGTCGCCGCAAAGGTCCCGTTGAAGGCAACTTGGTCTCTCCAACTCGGCTTCGCCCTCTCGTCGGGGTTGATATTCGATTTGTTGCCTCTGGATGTGCATCTTGTCATTGCGTGGCATTGGATGTCGAAGGGCGATGCTACACATGGGGACGCAATGAGAAGGGGCAGCTGGGTCATGGAGATACCATTCAGCGCGATAGGCCAACCGTGGTGTCTGAACTTTCGAAATACAAGATTATCAAAGCTGGAGCAGGGAGGAATCACACGGTAGTCGTTACAGAGGATGGACATTCCCTTGCCTTTGGTTGGAATAAACATGGACAGCTAGGTTCAGGTTCTGTAAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTGTCGGAAGTCAAATATACTACTTGCGGTGGTGACTTCACTGTTTGGTTATCATCTGTTGAAGGAGCTTCTATACTTACTGCTGGGCTTCCACAGTACGGGCAGCTTGGACATGGAACAGACAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAAGCCCAACCACGTCCTCGGGCAATTGCTGCACTCACTGGGGAAACAATAGTCAAAGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTTTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGTCGTGTAGATGTTTTCCAGAACAGAAATGTTCTGCCTCCTGATGCTGTGATTTCAGCTGGTTCTGTGAACTCTGCATGCACTGCAGGTGGAGGGCAATTGTATATGTGGGGCAAAATAAAGAACACTGGTGATGACTGGATGTATCCGAAGCCTCTAATGGATTTAAGTGGCTGGAACATACGATGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCTTCATGCATCAGTTGGGGCCACGCTCAACATGGAGAATTGGGATATGGACCTAATGGACAAAAGTCTTCAGCAGTACCTAAGAAAGTGGATATTCTTGAGGGGATGCATGTTATGAGTGTTGCTTGTGGTATGGGTCATTCCATGGTCATTGTTGATAGAACAAATGTTGGTGAACGACTTGACCAGCTTGATATATATGATGGCAAAGCTTCTGGTGAAGTGAATGAAGAACCTGTAAAGAAGACTCCAGTACCTAAGCAGAGTACAAAAAAGGGTGCGAAAGGTGCTGACAATTCCAAGAAGAGGAAGAAATCAAAAGAATTGTCTGAATCAGAGGAGGAAGAGGATGGTGAAGAAAGTGATGATAGCGAGGATCAAGTTAATGGTGTGGCCAAGGGGAAAAGGAAGCGCGGTGGAAATAATTCTGGTAAAGCGAAAGCTAAAGGTAAAGGTTCTGGTGCTGGGCGTAATCGCCCTCCAGTAAAAACGGCGAAGAGAGGGAGGCCCCGTAAGTCATGA 1566 0.4713 MSALEAEKNVEEEKEVVKGGELLSCGGTCWDIIGRRKGPVEGNLVSPTRLRPLVGVDIRFVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIIKAGAGRNHTVVVTEDGHSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKYTTCGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIAALTGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPNGQKSSAVPKKVDILEGMHVMSVACGMGHSMVIVDRTNVGERLDQLDIYDGKASGEVNEEPVKKTPVPKQSTKKGAKGADNSKKRKKSKELSESEEEEDGEESDDSEDQVNGVAKGKRKRGGNNSGKAKAKGKGSGAGRNRPPVKTAKRGRPRKS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0112 521 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Dere04g0112 521 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Dere04g0112 521 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Dere04g0112 521 Gene3D - 211 406 IPR009091 -
Dere04g0112 521 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Dere04g0112 521 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Dere04g0112 521 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Dere04g0112 521 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Dere04g0112 521 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Dere04g0112 521 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Dere04g0112 521 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Dere04g0112 521 MobiDBLite consensus disorder prediction 418 433 - -
Dere04g0112 521 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Dere04g0112 521 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Dere04g0112 521 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Dere04g0112 521 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Dere04g0112 521 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Dere04g0112 521 PANTHER PROTEIN RCC2 7 517 IPR028641 -
Dere04g0112 521 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Dere04g0112 521 MobiDBLite consensus disorder prediction 418 521 - -
Dere04g0112 521 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Dere04g0112 521 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Dere04g0112 521 Gene3D - 7 210 IPR009091 -
Dere04g0112 521 SUPERFAMILY RCC1/BLIP-II 18 402 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0112 Dere-ChrDere04 1172827 1179333 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0112 04 1172827 1179333 Dere04g0112 04 1172827 1179333 ECH