Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0050 ATGCTCCCGCTTCATTCTTGTACATGTCGCGGTGCTTCCACGGCAAAATCATTTCGAACCTCTCCTTCTCTCTTCTCCGCTGGGGGTCGGAATCATAAGTTTCCTCTTAGTGTTGCGAGAACAATTAGACGCAGCTCTGGTTTCGCCGTGGACTCAGATTCCGATGGAGAGCAAGAACCGGTCTTCGTTAAGAGGACGAATTTCGCTGGCATACGGTTGGAGGAGACTGTCGAGACAAGTTCAGGAAAACTCAGGCTCGATTCTTGGATATCTTCCCGCATCAGCGGCATAAGTAGGGCTCGCGTGCAGGCAAGTATTCGAGCGGGGTTCGTTCATGTCAACGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGGGCTGGGGATACGATCAATTGCATGATCTCAGAGTTACAACAGTTGAGAGCTGAGCCAGAACAAATGCAGTTGGATATAGTTTATGAAGATGAGCATGTACTAGTAATTAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACATCTGGCACACTTGTCAATGGCATTCTTCACCATTGCAGCCTTCCAAAGGTTGAAATTTTTAATAAAGAAGCTCTTTCAGGGACTGATGACTCTGATGATGATTCTGATAGCTTCTGTATAGATCCAAGTTCTAGTGAAGGGTTACAATCACATTCCGGCATGCATGGAGCATCAGTCCGCCCAGGAATTGTGCACAGGCTGGACAAGGGCACCAGTGGATTGCTTGTTGTAGCAAAGAATGAACATTCCCATGCCCATTTATCTGAACAATTCAAGCTACGTACTATCAAGAGGGTGTATGTTAGTCTCACTGCTGGGGTTCCCACACCAACTGCTGGACGAGTAGAGGTTCCAGTTGGTCGTGACTCTAATAACCGGATTCGAATGACTGCTGTAGCTGGATCAATTAATTCTGGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCGGAGGGTGCTTGTGCATTGATTGAGTGGAGGCTAGAAACTGGACGCACTCATCAGATACGTGCACACTCGAAGTATCTGGGAGTTCCACTTCTGGGTGATGAGGTGTACGGAGGAACGAAGAGCATGGCGTTGTCACTACTTCTGCCCAGAATACCACCGAGCTTGCGTGGCAACATTATACAAATGGTTTCTAAGCTAGATAGACCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCATACAGGAGAGAAGTTACACTTTTCATGCCAACCCCCCGCAGACTTCGATGAGATTTTGAGTCAGCTTCGTAGAATTGGCTGTGAGAGGTTATCTTCTTCGCAGCCTTCCATTCCATGA 1359 0.4709 MLPLHSCTCRGASTAKSFRTSPSLFSAGGRNHKFPLSVARTIRRSSGFAVDSDSDGEQEPVFVKRTNFAGIRLEETVETSSGKLRLDSWISSRISGISRARVQASIRAGFVHVNGRVVDKVSFNVRAGDTINCMISELQQLRAEPEQMQLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCSLPKVEIFNKEALSGTDDSDDDSDSFCIDPSSSEGLQSHSGMHGASVRPGIVHRLDKGTSGLLVVAKNEHSHAHLSEQFKLRTIKRVYVSLTAGVPTPTAGRVEVPVGRDSNNRIRMTAVAGSINSGKARYAASRYKVIEILAEGACALIEWRLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMALSLLLPRIPPSLRGNIIQMVSKLDRPCLHALTLGFQHPHTGEKLHFSCQPPADFDEILSQLRRIGCERLSSSQPSIP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0050 452 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Dere04g0050 452 SUPERFAMILY Pseudouridine synthase 144 437 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere04g0050 452 MobiDBLite consensus disorder prediction 202 233 - -
Dere04g0050 452 FunFam RNA pseudouridine synthase 2 chloroplastic 71 139 - -
Dere04g0050 452 Pfam S4 domain 85 131 IPR002942 GO:0003723
Dere04g0050 452 SMART s4_6 84 142 IPR002942 GO:0003723
Dere04g0050 452 Pfam RNA pseudouridylate synthase 158 355 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere04g0050 452 CDD S4 85 163 - -
Dere04g0050 452 ProSiteProfiles S4 RNA-binding domain profile. 84 131 - -
Dere04g0050 452 Gene3D Pseudouridine synthase 141 425 - -
Dere04g0050 452 Gene3D - 69 140 IPR036986 GO:0003723
Dere04g0050 452 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 434 - -
Dere04g0050 452 CDD PseudoU_synth_RluA_like 159 410 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere04g0050 452 ProSitePatterns Rlu family of pseudouridine synthase signature. 241 255 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0050 Dere-ChrDere04 607580 611658 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0050 04 607580 611658 Dere04g0050 04 607580 611658 ECH