Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0048 ATGGCCTTCATCAACTCCAGGTTACGCCTCCACCACTCTCTCACCCGCAGTGTCAAACTTTATTCTTCTTCTTCAGCTTTAGTTTCAGAAGCTCCTTTTCTTCAACAAGGTGCGGACGAAACTCCCCAAATCACAAACTTATCTCCCGAAGAATCCCATATAGCCGACAAATTTCACTCTTTAATCAAAGACCATTACCGCAACAACCCTAGTCCTAACCCCACTCCACCCTCCCCTAATTTTACAATACCCGTTCTCTCCCTCGATTTTTCTCGAATCTCTGCCCTCCATCCACTTTCCCCCTCCATCGTCTGTCGCGTGCTTGGGAAATGCGGCGGCGTCCGCCACGGCATCCCTTTTCTCCAATCCCTCGCTTTCTTCAATTGGGTCACCGCGCTCGAGGGTTTTCCCTCCTCGCCGGAGCCCTATATTGAGATGGTTGACCTCGCCGGAAAGCTCAAGCACTTCGATTTAGCCTGGCATTTCATCGATTTGATGAAAGCTCGAGGTGTCCCAATAACCGTTGAGACATTCTCTTTTCTCGTCCGGCGATACGTGAGAGCTGGATTGGCTGCGGAGGCAGTGCACACGTTTAATCGGATGGAAGATTATGGTTGCACGCCTGACAAGATTGCATTTTCTATTGTGATTAGTATTCTGTGCAAGAAGAGAAGGGCAAGCGAAGCTCAGTCTTTTTTTGATAGTTTGAAGCACAGATTTGAGCCCGATGTCATAATCTACACCAACTTAGTTCGTGGTTGGTGCCGAGCAGGTAATATTTCCGAGGCCGAACGTGTATTTAGGGAAATGAAGATGGCTGGAATCAAGCCCAATGTTTATACTTATAGCATTGTGATTGACTCACTATGTCGGTGTGGACAAATTACTCGTGCGCATGATGTTTTCTCGGAGATGTTAGATGTGGGTTGTGACCCAAATTCCATTACTTTTAACAATCTAATGCGTGTTCATGTCAAAGCTGGAAGGACTGAAAAGGTATTGCAAGTTTATAATCAGATGAAGAGACTTGAATGTCCTCCTGATACGATTACCTATAATTTCCTTATAGAGACCTATTGTAAAGATGATAATCTTGTAGAAGCTACCAAGATTCTCAATTCAATGGTTAAGAAAGGGTGTGCTCCTAATGTGTCTACTTTCAATCTTATATTTGGATGCATAGCGAAGTTAAACGATATAAACGGTGCTCATCGGTTGTATGCTAAAATGAAGGAACTCAAGTGTCAGCCTAATACCTTGACTTACAATACATTAATGAGTATGTTCGCTCGTGCTAAATCTACTGATATGGTTCTCAAAATGAAGAAGGAGATGGATGAGAATGAAGTTGAGCCTAATGTGAATACTTACCGAGTGTTGATCTCAATGTATTGCGGAATGGGACACTGGAACAATGCCTACAAGTTACTGAGGGAGATGGTTGAAGAGAAATGCTTAAAACCAAATCGATTGGTTTATGAGACGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTTGATAAGATGGTTGACAGGGGATTCTTCTCTCGCTCTATATAG 1581 0.439 MAFINSRLRLHHSLTRSVKLYSSSSALVSEAPFLQQGADETPQITNLSPEESHIADKFHSLIKDHYRNNPSPNPTPPSPNFTIPVLSLDFSRISALHPLSPSIVCRVLGKCGGVRHGIPFLQSLAFFNWVTALEGFPSSPEPYIEMVDLAGKLKHFDLAWHFIDLMKARGVPITVETFSFLVRRYVRAGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRRASEAQSFFDSLKHRFEPDVIIYTNLVRGWCRAGNISEAERVFREMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMLDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLECPPDTITYNFLIETYCKDDNLVEATKILNSMVKKGCAPNVSTFNLIFGCIAKLNDINGAHRLYAKMKELKCQPNTLTYNTLMSMFARAKSTDMVLKMKKEMDENEVEPNVNTYRVLISMYCGMGHWNNAYKLLREMVEEKCLKPNRLVYETVLSELRKAGQLKKHEELVDKMVDRGFFSRSI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Dere04g0048 526 Pfam Pentatricopeptide repeat domain 166 220 IPR002885 -
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Dere04g0048 526 Pfam PPR repeat family 417 465 IPR002885 -
Dere04g0048 526 Pfam PPR repeat family 242 291 IPR002885 -
Dere04g0048 526 Pfam PPR repeat family 312 361 IPR002885 -
Dere04g0048 526 Pfam PPR repeat 385 415 IPR002885 -
Dere04g0048 526 Gene3D Tetratricopeptide repeat domain 225 327 IPR011990 GO:0005515
Dere04g0048 526 Gene3D Tetratricopeptide repeat domain 91 224 IPR011990 GO:0005515
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Dere04g0048 526 SUPERFAMILY TPR-like 172 482 IPR011990 GO:0005515
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Dere04g0048 526 Gene3D Tetratricopeptide repeat domain 329 443 IPR011990 GO:0005515
Dere04g0048 526 Gene3D Tetratricopeptide repeat domain 444 525 IPR011990 GO:0005515
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Dere04g0048 526 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 143 394 - -
Dere04g0048 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 386 419 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 315 349 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 246 279 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 456 488 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 350 384 IPR002885 -
Dere04g0048 526 NCBIfam pentatricopeptide repeat 280 313 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0048 177 526 Glycosyltransferase AT1G05670 24.432 7.49e-33 131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0048 04 602810 604390 Dere04g0048 04 602810 604390 ECH