Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2564 ATGATTTTGTGGGCAAGTTCTACGAAGAAGGACAGTAATAATATGAAGTTTAGCTATCTGAACGCCTTCTTTAGCACGCCTATCTACCTTACGTCACGTGACCATCTCTCGCTCTCTCTTATCTCTCTCAACATAAATCCTTGTCTCCCCCACCAAAATTCTACCATTTCCATTCTCTCTCCACTTCCAAATCTCACTCTTCAACTCCACTCGCTTCCTGGCTGGTCTCACAAGACCAGTAAATCAGATCTCTTTGTTATCTTCAAGATGGCCACTGGTCAACTATTCTCCCCCACTACACAAGCATTGTTTTACAACTACAAGCAACTTCCTATCCAGCGGATGCTTGATTTTGACTTCCTTTGCGGTCGGGAAACGCCGTCAGTTGCTGGAATCATTAATCCTGGTTCTGAAGGTTTTCAAAAGCTCTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTGCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCTGCTGCTTCATCAATGGCCGCTTTGAAGCAGTCAACACTTAGAGTTATTGCTATTATTGCTGAAGGTGTACCTGAGGCCGACACCAAGCAATTGATTGCATATGCCCGGTCAAACAATAAGGTTGTTATTGGCCCAGCCACCGTTGGAGGAATTCAAGCTGGTGCTTTTAAGATAGGCGACACAGCAGGGACAATTGACAATATAATTCAATGCAAGCTGTACAGGCCTGGATCTGTTGGCTTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACACTATTGCTCGAGTAACGGATGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTTCCAGGTTCCACACTTTCTGATCATATTTTGCGGTATAACAACATACCACAGGTTAAAATGATGGTAGTGCTTGGGGAACTGGGTGGACGTGATGAGTATTCCCTAGTGGAAGCCCTAAAACAGGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCACGGCTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCCAAAAGTGGTGGTGAAATGGAGTCTGCTCAAGCGAAGAATCAAGCACTAAGAGAAGCTGGAGCAATTGTTCCCTCTTCATATGAAGCTTTTGAAGCTGCAATTAAGGAAACATTTCACAAATTGGTGGAAGAAGGGAAAATCACACCAGTGAAGGAATTTACTCCTCCACAGATTCCCGAGGACCTTAAATCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATATCCACCATCTCTGATGATAGAGGGGAGGAGCCATGCTATGCTGGTGTTCCCATGTCTAACATTATCGAACAGGGTTTTGGTGTGGGTGATGTTATATCTCTACTTTGGTTCAAACGCAGCCTTCCCCGTTATTGCACACAATTTATTGAGATATGCATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATGCTATAGTGACAGCAAGGGCTGGGAAGGACCTTGTTTCCTGCCTTGTATCAGGTTTACTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGTTACTTCAAGGATGCTTATGACAGGAATCTTACACCTTACGAGTTTGTTGAAGGTATGAAGAAGAAGGGCATCCGAGTGCCAGGAATAGGGCACAGGATCAAGAGTAGAGACAACAAAGATAAGAGAGTAGAGATGCTTCAGAAGTTCGCAAGAACACATTTTCCATCTGTAAAATACATGGAATACGCCGTTCAGGTTGAAACCTACACCCTCTCAAAGGCAAATAACCTCGTTCTCAACGTAGATGGAGCGATTGGGTCCCTTTTCTTGGATCTTCTTGCCGGCAGTGGAATGTTCTCCAAGCAAGAGATCGATGAAATTGTCGAGATTGGCTATCTGAATGGGCTATTTGTGCTGGCTCGTTCCATTGGCTTGATTGGGCATACCTTTGACCAAAAGAGACTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 2094 0.4436 MILWASSTKKDSNNMKFSYLNAFFSTPIYLTSRDHLSLSLISLNINPCLPHQNSTISILSPLPNLTLQLHSLPGWSHKTSKSDLFVIFKMATGQLFSPTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSMAALKQSTLRVIAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRYNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAIVPSSYEAFEAAIKETFHKLVEEGKITPVKEFTPPQIPEDLKSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSNIIEQGFGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNAIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKKKGIRVPGIGHRIKSRDNKDKRVEMLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2564 697 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 225 IPR036291 -
Dere03g2564 697 PANTHER ATP-CITRATE SYNTHASE 92 696 IPR002020 GO:0006099|GO:0046912
Dere03g2564 697 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 263 292 IPR033847 -
Dere03g2564 697 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 348 364 IPR017440 -
Dere03g2564 697 Gene3D - 227 412 IPR016102 -
Dere03g2564 697 FunFam ATP-citrate synthase subunit 1 544 637 - -
Dere03g2564 697 CDD CCL_ACL-C 458 695 - -
Dere03g2564 697 FunFam ATP-citrate synthase beta chain protein 91 226 - -
Dere03g2564 697 Gene3D - 539 636 IPR016143 -
Dere03g2564 697 FunFam ATP-citrate synthase subunit 227 412 - -
Dere03g2564 697 Gene3D - 91 226 - -
Dere03g2564 697 Pfam CoA-ligase 262 387 IPR005811 GO:0003824
Dere03g2564 697 Pfam Citrate synthase, C-terminal domain 488 687 IPR002020 GO:0006099|GO:0046912
Dere03g2564 697 SUPERFAMILY Citrate synthase 219 693 IPR036969 GO:0046912
Dere03g2564 697 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 IPR017866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2564 Dere-ChrDere03 40067666 40076803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2564 90 697 Acyl Lipid Metabolism Gene Families AT5G49460 93.092 0.0 1142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2564 03 40067666 40076803 Dere03g2564 03 40067666 40076803 ECH