Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2551 ATGTGTCCCTCCGGCCGCTTCATCTCGCCTCATTCCGTCGCCTCCTCCTCCGTCACCGCCGTCTTCGACTCGCCTTGCCGACCAGCTTTCGACGTGCTCGACGCCGACCGCGACGGCAAGATTAGCTCCGACGACCTCCGGACTTTTTATGCCGGGAAGGCCGACGTCGATGTGGACGACGACGTCATTGGGACGATGATGACGGTGGCGGACACGAACAAAGACGGGTTTGTGGAGTACGAGGAGTTCGAGAGGGTTGTTCTCGGAAACAACGGCTGCAGAGAGAAGAACGGATCCCTGAGTTCGGCGACGCCGTTCATGGAGGAGGTGTTCAGAGCGATGGACAAGGATGGTGACGGCAAGCTCAGCCACCGGGATTTGAAGAGCTTCATGGAAATGGCTGGCCTCGCCGCCACTGACGACGACATCAACGCCATGATCAAATTGGCCGACGGTGACCGAAACGGCGGCGTCACGTTTGAAGGATTGCATCGAATATTAAATTGCTGTTGA 513 0.5789 MCPSGRFISPHSVASSSVTAVFDSPCRPAFDVLDADRDGKISSDDLRTFYAGKADVDVDDDVIGTMMTVADTNKDGFVEYEEFERVVLGNNGCREKNGSLSSATPFMEEVFRAMDKDGDGKLSHRDLKSFMEMAGLAATDDDINAMIKLADGDRNGGVTFEGLHRILNCC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2551 170 ProSitePatterns EF-hand calcium-binding domain. 34 46 IPR018247 -
Dere03g2551 170 Gene3D - 14 88 - -
Dere03g2551 170 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Dere03g2551 170 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Dere03g2551 170 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Dere03g2551 170 CDD EFh 108 161 IPR002048 GO:0005509
Dere03g2551 170 Pfam EF-hand domain pair 107 164 IPR002048 GO:0005509
Dere03g2551 170 Pfam EF-hand domain pair 27 86 IPR002048 GO:0005509
Dere03g2551 170 SUPERFAMILY EF-hand 25 167 IPR011992 -
Dere03g2551 170 ProSiteProfiles EF-hand calcium-binding domain profile. 29 56 IPR002048 GO:0005509
Dere03g2551 170 SMART efh_1 62 90 IPR002048 GO:0005509
Dere03g2551 170 SMART efh_1 106 134 IPR002048 GO:0005509
Dere03g2551 170 SMART efh_1 142 170 IPR002048 GO:0005509
Dere03g2551 170 SMART efh_1 25 53 IPR002048 GO:0005509
Dere03g2551 170 ProSiteProfiles EF-hand calcium-binding domain profile. 138 170 IPR002048 GO:0005509
Dere03g2551 170 PANTHER CALCIUM BINDING PROTEIN 107 163 - -
Dere03g2551 170 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Dere03g2551 170 Gene3D - 91 168 - -
Dere03g2551 170 CDD EFh 26 83 IPR002048 GO:0005509
Dere03g2551 170 FunFam Calcium-binding protein CP1 19 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2551 Dere-ChrDere03 39903317 39903829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2551 1 169 EF-hand Containing Proteins AT5G49480 52.353 2.01e-53 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2551 03 39903317 39903829 Dere03g2551 03 39903317 39903829 ECH