LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere03g2530	ATGTGGAGAGAAGCTCAGTCACGCGGAAATGAATATACCACCAAGCTAGTCGTGCCGGTGACAAATTCACCACCGCAAAACGCCGAAGGAGGTTGCCGTATTCGGATTTACCTATCCATCATTGTGAGCGGAAACTGTACGACATCTAGTTACAGGAAGACAAGAAAACAAAAAAAGCAAAAAATCCATTGCCTACGCCACTGGGAAGTGGAGGTTCCGTGTACATATGGCTCTGGGTGGGCCCCTGGGAGCATCTTACTTTTTGAGTTCGTTATCACTGAGACACGTGGACAACCGCCTTTACACTCGTGTTTGGCGTTGGCTGTGTGGGGGAGTACTGCAACCACCCACGACATGACGTTTGTGGCTCTGTTCGTTACGGCCACCAAGCTCGCCGGAGCACTCGTCACGCTCACCGTCGCCGCCAATGCCTTCTCCTTCCACCTCTACCGGAGAAAGAATCTGCGCCCATTCCACTCCCCTATCGATGAGTCCTCCGACGTACTTGCCGTCTTCAATGTTCACGAAGGGGAAGATGGGTTTTTCTTTGGCCTGGCTACAGCACCAGCACATGTTGAGGACAGGCTTAATGATGCTTGGATCCAGTTTGCAGAAGAAGAAAAGCCTTATGACTCAAAAGAGGTGAAACAACCAGCTGATGCTTTGATTGGCTCCGCTGCTGGTGATGGTGGGTCTTACCGAGCTGCTTCTCAACAACATGGTGATAAAGGAGTTAAAAAGAGTAAAAAGCCTCTAAAGGTTGCTATGGAGGCCATGATTAGAGGAATTGAGAAGTATATAGAAGAAGAAGCACCACCGGCAGCTGGTGTGCCAAAAGAAGAACACCATCATAATGTAACTGCTTGGCATAATGTTCCACACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCTAAAGATACTGGTGTTACTGTCTTTCGCATGGGTATAGATTGGTCAAGAATAATGCCAGAGGAGCCAGTAAATGGGCTTAAAGAATCTGTTAATTATGCTGCTTTAGAACGTTATAAGTGGATTATCAATAGGGTTCGGTCATATGGAATGAAGGTCATGCTCACTCTTTTTCATCACTCACTCCCACCCTGGGCTGGCGAGTATGGAGGTTGGAAGCTGGAAAAGACTGTTGATTATTTCATGGACTTTACCAGGCTCGTTGTAGACAGTGTATCTGATCTGGTAGAATATTGGGTTACATTTAATGAACCTCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCAGATATGCTGGAGGTTGCTACTTCTGCTCTTCCAACTGGTGTTTTCCAACAGGCCATGCATTGGATGGCTATTGCACACTCAAAAGCATATGATTATATCCATGAACAAAGTAACTCATTAAAACCCATAGTTGGTGTAGCACACCATGTGTCATTCATGCGACCCTATGGTCTGTTTGATGTTGCTGCTGTTTCACTGGCTAATTCCTTGACTCTCTTCCCGTACATCGATAGTATTTCTGAAAAGCTGGATTTTATAGGCATAAACTACTATGGGCAGGAAGTTGTTTCTGGTGCGGGACTGAAACTTGTGGAAACAGATGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCTTATATCGAATGCTGCTTCAGTTCCATGAAAGATACAAACATCTAGATGTTCCCTTCATAATTACTGAAAATGGGGTATCTGATGAGACAGATATAATCCGTCGACCATATCTGTTGGAACATTTGCTTGCTATATATGCAGCCATGATAATGGGTGTGCCTGTGCTTGGTTACCTGTTTTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTAGCAGTTGATCGGGCAAATAATCTTGCACGCATCCCACGTCCTTCTTACCACCTATTTTCTAAAATTGTGAACACGGGTAAAGTTACATGTGAAGACCGTGAAGGAGCATGGAATGAACTCCAGAGAGCTGCCAATGAGAAGAAAACAAGACCATTTTATCGGGCTGTAGATAAGCATGGTTTGATGTATGCAGGTGGACTTGATGAACCTATTCAGCGACCTTATATTGAGCGAGATTGGCGGTTTGGTCACTATCAGATGGATGGTCTTCAGGATCCTTTGAGCCGCATCGCAAGATTCATTGTCCGGCCATTCTCCCTGAAGAGGAAAAGGAAACCTCAAAAGAAGAGTGCCAAATTAGTTCTTCAGTCTCTTGAAGCCATATGA	2289	0.4535	MWREAQSRGNEYTTKLVVPVTNSPPQNAEGGCRIRIYLSIIVSGNCTTSSYRKTRKQKKQKIHCLRHWEVEVPCTYGSGWAPGSILLFEFVITETRGQPPLHSCLALAVWGSTATTHDMTFVALFVTATKLAGALVTLTVAANAFSFHLYRRKNLRPFHSPIDESSDVLAVFNVHEGEDGFFFGLATAPAHVEDRLNDAWIQFAEEEKPYDSKEVKQPADALIGSAAGDGGSYRAASQQHGDKGVKKSKKPLKVAMEAMIRGIEKYIEEEAPPAAGVPKEEHHHNVTAWHNVPHPEERLRFWSDPDTELKLAKDTGVTVFRMGIDWSRIMPEEPVNGLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVEYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEVATSALPTGVFQQAMHWMAIAHSKAYDYIHEQSNSLKPIVGVAHHVSFMRPYGLFDVAAVSLANSLTLFPYIDSISEKLDFIGINYYGQEVVSGAGLKLVETDEYSESGRGVYPDGLYRMLLQFHERYKHLDVPFIITENGVSDETDIIRRPYLLEHLLAIYAAMIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTCEDREGAWNELQRAANEKKTRPFYRAVDKHGLMYAGGLDEPIQRPYIERDWRFGHYQMDGLQDPLSRIARFIVRPFSLKRKRKPQKKSAKLVLQSLEAI	762

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere03g2530	762	PANTHER	GLYCOSYL HYDROLASE	280	509	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	Pfam	Glycosyl hydrolase family 1	306	491	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	Pfam	Glycosyl hydrolase family 1	511	659	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	MobiDBLite	consensus disorder prediction	230	249	-	-
	Dere03g2530	762	ProSitePatterns	Glycosyl hydrolases family 1 active site.	573	581	IPR018120	-
	Dere03g2530	762	Gene3D	Glycosidases	264	670	-	-
	Dere03g2530	762	PRINTS	Glycosyl hydrolase family 1 signature	516	530	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	PRINTS	Glycosyl hydrolase family 1 signature	585	596	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	PRINTS	Glycosyl hydrolase family 1 signature	573	581	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	PRINTS	Glycosyl hydrolase family 1 signature	630	642	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	PRINTS	Glycosyl hydrolase family 1 signature	606	623	IPR001360	GO:0004553\|GO:0005975
	Dere03g2530	762	SUPERFAMILY	(Trans)glycosidases	285	664	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere03g2530	Dere-ChrDere03	39654119	39661254	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere03g2530	124	736	Glycoside Hydrolase	AT3G06510	64.869	0.0	852

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere03g2530	03	39654119	39661254	Dere03g2530	03	39654119	39661254	ECH