Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2520 ATGTCGACAGCGTTTCAAAGTAACGAAAGAGACGAGCAATCTCCTCTTATGCTGATTAATTTTGCACTCTGGCCACATTGGCTGAAGCAAAACACTATCCCGTCCATCCTCAAGCGTGAAGGAGAGACATCGGACATAGCCATGTCTCTGGCTCAGCAATTCACCGGCCTCAGGTGCTGCTATCCTCTCTCTTCTTCGCATCTCTCCAAACCCTTCTCTCCCACCTATCCCCACAAGCGCACTTCGCTTCCCATTGTCGCTTCCGTAGCCATATCCAATGCGCAGACCAAAGAGAGGCTCAAGCTCAAAGAGCTCTTCGAGGAAGCCTACGAGCGCTGTCGCACTGCTCCCATGGAAGGGGTTTCCTTCACCGTCGAAGACTTCAGCGCCGCGCTGGATAAGTATGACTTCGATTCTGAAATTGGGACCAAGGTTAAAGGCACTGTTTTCTGTACAGATGCCAATGGAGCGCTTGTTGACATTACTGCAAAATCGTCGGCGTACTTGCCTCTCCAAGAGGCATGCATCCACAGAATTAAACATGTAGAAGATGCAGGTATAGTTCCTGGCTTGAGAGAGGAGTTTGTAATCATTGGAGAAAATGAAGCTGATGATAGCTTGATCTTGAGTTTAAGAACTCTTCAATATGACCTTGCATGGGAACGCTGCAGACAACTTCAAGCAGAAGATGTTGTTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGAGTTGTGGCTGTGGTGGAAGGCCTTAGAGGGTTTGTTCCTTTCTCACAGATATCAACGAAATCAACTGCAGAAGAGCTTCTTGAAAAGGAGCTTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAATCCAGACTTATTCTCAGTAACCGCAAGGCCATGGCTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGTCTAAAGCCATACGGTGCCTTCATTGATATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGATCGCGTAACGGATATCTCAACTGTTCTTCAACCTGGTGATACTCTCAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCAGAGTGAGCCTTTCCACGAAGAAGTTGGAACCCACACCGGGAGACATGATTCGCAATCCAAAACTCGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTTAGACAGAGAATTGCTCAAGCAGAGGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCGGAGAGTGGATTAACTCTCAGCAGTGATGGAATCTTGGGACCACTTACTTCAGACTTGCCTGCAGAGGGAATGGATCTGAGTGAGGTGCCCCCCGCTGAAGAATCTTGA 1374 0.4818 MSTAFQSNERDEQSPLMLINFALWPHWLKQNTIPSILKREGETSDIAMSLAQQFTGLRCCYPLSSSHLSKPFSPTYPHKRTSLPIVASVAISNAQTKERLKLKELFEEAYERCRTAPMEGVSFTVEDFSAALDKYDFDSEIGTKVKGTVFCTDANGALVDITAKSSAYLPLQEACIHRIKHVEDAGIVPGLREEFVIIGENEADDSLILSLRTLQYDLAWERCRQLQAEDVVVKGKIVGANKGGVVAVVEGLRGFVPFSQISTKSTAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGMDLSEVPPAEES 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2520 457 Pfam S1 RNA binding domain 306 375 IPR003029 GO:0003676
Dere03g2520 457 Pfam S1 RNA binding domain 228 292 IPR003029 GO:0003676
Dere03g2520 457 SUPERFAMILY Nucleic acid-binding proteins 306 385 IPR012340 -
Dere03g2520 457 CDD S1_RPS1_repeat_hs4 307 375 - -
Dere03g2520 457 Gene3D - 302 379 IPR012340 -
Dere03g2520 457 ProSiteProfiles S1 domain profile. 307 375 IPR003029 GO:0003676
Dere03g2520 457 SMART S1_6 228 294 IPR022967 -
Dere03g2520 457 SMART S1_6 305 375 IPR022967 -
Dere03g2520 457 SMART S1_6 140 212 IPR022967 -
Dere03g2520 457 SUPERFAMILY Nucleic acid-binding proteins 225 298 IPR012340 -
Dere03g2520 457 ProSiteProfiles S1 domain profile. 230 294 IPR003029 GO:0003676
Dere03g2520 457 PRINTS Ribosomal protein S1 signature 233 249 IPR035104 -
Dere03g2520 457 PRINTS Ribosomal protein S1 signature 142 160 IPR035104 -
Dere03g2520 457 PRINTS Ribosomal protein S1 signature 160 174 IPR035104 -
Dere03g2520 457 PRINTS Ribosomal protein S1 signature 251 268 IPR035104 -
Dere03g2520 457 FunFam 30S ribosomal protein S1 126 223 - -
Dere03g2520 457 SUPERFAMILY Nucleic acid-binding proteins 137 237 IPR012340 -
Dere03g2520 457 Gene3D - 125 222 IPR012340 -
Dere03g2520 457 ProSiteProfiles S1 domain profile. 142 212 IPR003029 GO:0003676
Dere03g2520 457 CDD S1_RPS1_repeat_ec1_hs1 142 212 - -
Dere03g2520 457 MobiDBLite consensus disorder prediction 427 457 - -
Dere03g2520 457 PANTHER 30S RIBOSOMAL PROTEIN S1 56 444 - -
Dere03g2520 457 Gene3D - 223 301 IPR012340 -
Dere03g2520 457 CDD S1_RPS1_repeat_ec2_hs2 230 294 - -
Dere03g2520 457 Coils Coil 392 412 - -
Dere03g2520 457 FunFam 30S ribosomal protein S1, chloroplastic 224 300 - -
Dere03g2520 457 FunFam 30S ribosomal protein S1 303 382 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2520 03 39499812 39507769 Dere03g2520 03 39499812 39507769 ECH