Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1098 ATGGATGAAAATCCTGAGCAGAACAAGCTCCCTGAGCTCAAATTAGACGCAAAGCAAGCACAGGGGTTTCTATATTTTTTCAAAGCCCTACCTCAAGACCCCAGGGCAATTCGGCTCTTTGATCGCCGAGACTACTATACTGCTCATGGCGAGAATGCAACTTTTATTGCTAAGACCTACTACCGTACTACTACTGCATTAAGACAACTGGGCAGTGGATCTGATGCTGTTTCCAGTATCAGTGTTAGTAGGAACTTGTTTGAAACAATTGCCCGAGATTTACTTCTGGAGAGAACAGACCATACACTTGAGCTCTATGAGGGTAGTGGCTCTAACTGGAGATTGGTCAAAAGTGGAACACCTGGTAATATAGGTAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCCCCTGTTGTTGTTGCACTATCACCTAACTTTCGAGAAAACGGGTGCACAATTGGATTGGGATTTGTTGACCTAACTAAGAGAGTAGTTGGGATGGCTGAATTCCTTGATGATAGTCACTTTACGAATGTGGAGTCAGCATTGGTTGCTCTGGGTTGCAAGGAATGTCTTCTGCCTATAGAGAGTGGTAAGTCTAATGAAAATAGAATGTTGTGTGATGCATTGACTAAGTGTGGTGTAATGTTAACAGAGAGAAAGAAATCCGAGTATAAAACCAGGGATCTGGTACAGGATCTTGGCAGGCTTGTTAAAGGTTCAATTGAACCAGTTCGTGATTTAGTGTCTGGGTTTGAGTTTGCACCTGGTGCTTTGGGGGCATTACTATCTTATGCAGAGTTACTTGCAGATGAAAGCAATTATGGAAATTATACTCTTCAGAGGTACAATCTTGACAGTTACATGAGGTTAGATTCTGCCGCCATGAGGGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAACTTCAGTTTGTTTGGGCTCATGAATAGAACCTGCACAGCTGGAATGGGGAAACGTTTATTGCACATGTGGCTGAAACAGCCCTTATTGGATGTAAAAGAAATTAATTCTAGGCTGGATGTAGTACAAGCATTTGTAGAGGATACTGGGCTTCGTCAAGATCTGAGGCAACATCTGAAAAGAATATCAGACATTGAGCGATTAGTGCGAAATCTTCAAAAGCAGAGAGCTGGTCTACAACATATTGTAAAACTTTACCAGTCTTGTATAAGGCTACCTTACATTAAAAGTGCGCTGGAAAGATATGATGGACAATTTTCCTCAATGATGAAGGAAAGATATTTGGAACCTCTTGAGTTATGGACTGATGATGATCACCTAAACAAATTCATTGGTCTTGTAGAAGCTGCTGTTGACCTTGATCAACTGGAGAATGGGGAATACATGATTTCTTCAAGTTATGACTCTACACTAACTAAACTGAAGGAACAGCAAGAGTCATTAGAGAGCCAAATACACAATTTGCACCAACAAACTGCTAATGATCTTGACCTGCCAATAGATAAGGCATTAAAGTTAGACAAGAGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAGCACTCAGTTTATTGTATTGGAGACCAGGAAAGATGGAGTGAAGTTTACCAACACAAAGCTTAAAAAACTAGGGGATCAGTATCAGAAGATACTTGAGGAGTATAAGAACTGCCAAAAAGAGCTGGTTAATAGAGTAGTTCAAACTGCGGCAACTTTCTCTGAGGTGTTTGAGTCTTTGGCTGGATTACTTTCTGAATTGGATGTTCTACAAAGCTTTGCTGATTTAGCTTCCAGTTGTCCTACTCCTTACACAAGGCCTGATGTCACTTCATCGGATGAAGGAGATATTATATTAGAGGGCAGTAGACACCCTTGTGTCGAGGCTCAAGATTGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGCCCTAACATGGGTGGGAAATCAACATTTATCCGACAGGTGGGTGTAAATATTTTGATGGCACAAGTTGGATCTTTTGTCCCTTGTGACAAGGCCAGCATATCTGTCCGTGATTGTATCTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGAGGAGTTTCTACATTTATGCAAGAGATGCTTGAAACAGCTTCAATATTAAAAGGAGCTACAGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGAACATCAACTTATGATGGATTTGGTCTAGCCTGGGCCATTTGTGAGCACATTGTTGAACTGATAAAGGCACCTACTTTATTTGCAACCCACTTTCATGAACTGACTGCTTTGGCCCTTGAAAACATAAATGATGGTCCACAGAGGCAAATTGTTGGTGTGGAAAACTATCATGTTAGTGCACATATTGACTCATCAACTCGTAAACTGACTATGCTGTACAAGGTTGAACCAGGAGCTTGTGATCAAAGTTTTGGTATTCATGTTGCTGAGTTTGCAAATTTCCCAGAAAGTGTTGTCACTCTAGCTCGAGAAAAAGCAGCAGAATTGGAAGATTTTTCTCCATCTGCAATATACTCAGCTGATGCTTCAAAGACAGTGGGTACTAAACGTAAGAGAGAGTTTGAACATGATGAGGTCTCTAAAGGGGCTGCAAGGGCTCGCCAATTTCTTGAAGCATTCGCTGATTTGCCATTGGAAACTATGGATAAAACGCAAGCTTTGCAAGAAATAAGGAAGTTAAAGGATGGTTTGGAGAATGATGCAAAAAACTGTTGCTGGCTGCAGCAATTCTTGTAG 2823 0.4081 MDENPEQNKLPELKLDAKQAQGFLYFFKALPQDPRAIRLFDRRDYYTAHGENATFIAKTYYRTTTALRQLGSGSDAVSSISVSRNLFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSPNFRENGCTIGLGFVDLTKRVVGMAEFLDDSHFTNVESALVALGCKECLLPIESGKSNENRMLCDALTKCGVMLTERKKSEYKTRDLVQDLGRLVKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTLQRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDVVQAFVEDTGLRQDLRQHLKRISDIERLVRNLQKQRAGLQHIVKLYQSCIRLPYIKSALERYDGQFSSMMKERYLEPLELWTDDDHLNKFIGLVEAAVDLDQLENGEYMISSSYDSTLTKLKEQQESLESQIHNLHQQTANDLDLPIDKALKLDKSTQFGHVFRITKKEEPKIRKKLSTQFIVLETRKDGVKFTNTKLKKLGDQYQKILEEYKNCQKELVNRVVQTAATFSEVFESLAGLLSELDVLQSFADLASSCPTPYTRPDVTSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVELIKAPTLFATHFHELTALALENINDGPQRQIVGVENYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPSAIYSADASKTVGTKRKREFEHDEVSKGAARARQFLEAFADLPLETMDKTQALQEIRKLKDGLENDAKNCCWLQQFL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1098 940 CDD ABC_MSH2_euk 629 859 IPR032642 GO:0005524
Dere03g1098 940 SMART DNAend 313 641 IPR007696 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Coils Coil 369 396 - -
Dere03g1098 940 FunFam DNA mismatch repair protein 6 120 - -
Dere03g1098 940 FunFam DNA mismatch repair protein 121 290 - -
Dere03g1098 940 Pfam MutS domain I 22 127 IPR007695 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Gene3D DNA repair protein MutS, domain I 6 120 IPR016151 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Pfam MutS domain III 299 605 IPR007696 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Gene3D - 616 936 IPR027417 -
Dere03g1098 940 ProSitePatterns DNA mismatch repair proteins mutS family signature. 739 755 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Coils Coil 472 492 - -
Dere03g1098 940 Gene3D - 522 615 - -
Dere03g1098 940 Gene3D - 293 521 - -
Dere03g1098 940 SUPERFAMILY DNA repair protein MutS, domain III 296 610 IPR036187 -
Dere03g1098 940 FunFam DNA mismatch repair protein MSH2 616 936 - -
Dere03g1098 940 Coils Coil 552 572 - -
Dere03g1098 940 Pfam MutS family domain IV 468 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Pfam MutS domain II 142 282 IPR007860 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 Gene3D MutS, connector domain 121 290 IPR036678 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 61 860 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Dere03g1098 940 SMART mutATP5 658 856 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 PIRSF MSH2 5 940 IPR011184 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 FunFam DNA mismatch repair protein 293 510 - -
Dere03g1098 940 Pfam MutS domain V 661 859 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dere03g1098 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 860 IPR027417 -
Dere03g1098 940 FunFam DNA mismatch repair protein MSH2 512 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1098 Dere-ChrDere03 17587675 17596188 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1098 03 17587675 17596188 Dere03g1098 03 17587675 17596188 ECH